José Francisco Aldana Montes

Orcid: 0000-0002-2673-9474

Affiliations:
  • University of Malaga, Ada Byron Research Center, Spain


According to our database1, José Francisco Aldana Montes authored at least 152 papers between 1991 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
MOODY: An ontology-driven framework for standardizing multi-objective evolutionary algorithms.
Inf. Sci., 2024

2023
SALON ontology for the formal description of sequence alignments.
BMC Bioinform., December, 2023

GENECI: A novel evolutionary machine learning consensus-based approach for the inference of gene regulatory networks.
Comput. Biol. Medicine, March, 2023

Ensemble-based genetic algorithm explainer with automized image segmentation: A case study on melanoma detection dataset.
Comput. Biol. Medicine, March, 2023

2022
Semantic modelling of Earth Observation remote sensing.
Expert Syst. Appl., 2022

Automatic frequency-based feature selection using discrete weighted evolution strategy.
Appl. Soft Comput., 2022

2021
TITAN: A knowledge-based platform for Big Data workflow management.
Knowl. Based Syst., 2021

Ontology-driven approach for KPI meta-modelling, selection and reasoning.
Int. J. Inf. Manag., 2021

Injecting domain knowledge in multi-objective optimization problems: A semantic approach.
Comput. Stand. Interfaces, 2021

FIMED: Flexible management of biomedical data.
Comput. Methods Programs Biomed., 2021

Reconstruction of gene regulatory networks with multi-objective particle swarm optimisers.
Appl. Intell., 2021

2020
Optimizing ligand conformations in flexible protein targets: a multi-objective strategy.
Soft Comput., 2020

A multi-objective interactive dynamic particle swarm optimizer.
Prog. Artif. Intell., 2020

On the design of a framework integrating an optimization engine with streaming technologies.
Future Gener. Comput. Syst., 2020

Sequoya: multiobjective multiple sequence alignment in Python.
Bioinform., 2020

2019
Multi-objective ligand-protein docking with particle swarm optimizers.
Swarm Evol. Comput., 2019

Tool for materializing OWL ontologies in a column-oriented database.
Softw. Pract. Exp., 2019

BIGOWL: Knowledge centered Big Data analytics.
Expert Syst. Appl., 2019

Un Modelo Ontológico para el Gobierno Electrónico.
CoRR, 2019

Inference of gene regulatory networks with multi-objective cellular genetic algorithm.
Comput. Biol. Chem., 2019

VIGLA-M: visual gene expression data analytics.
BMC Bioinform., 2019

Bio-inspired optimization for the molecular docking problem: State of the art, recent results and perspectives.
Appl. Soft Comput., 2019

2018
InDM2: Interactive Dynamic Multi-Objective Decision Making Using Evolutionary Algorithms.
Swarm Evol. Comput., 2018

Towards an ontology-driven clinical experience sharing ecosystem: Demonstration with liver cases.
Expert Syst. Appl., 2018

jMetalSP: A framework for dynamic multi-objective big data optimization.
Appl. Soft Comput., 2018

Extending the Speed-Constrained Multi-objective PSO (SMPSO) with Reference Point Based Preference Articulation.
Proceedings of the Parallel Problem Solving from Nature - PPSN XV, 2018

Artificial Decision Maker Driven by PSO: An Approach for Testing Reference Point Based Interactive Methods.
Proceedings of the Parallel Problem Solving from Nature - PPSN XV, 2018

On the Design and Tuning of Machine Learning Models for Language Toxicity Classification in Online Platforms.
Proceedings of the Intelligent Distributed Computing XII, 2018

Multi-objective Metaheuristics for a Flexible Ligand-Macromolecule Docking Problem in Computational Biology.
Proceedings of the Intelligent Distributed Computing XII, 2018

About Designing an Observer Pattern-Based Architecture for a Multi-objective Metaheuristic Optimization Framework.
Proceedings of the Intelligent Distributed Computing XII, 2018

Scalable Inference of Gene Regulatory Networks with the Spark Distributed Computing Platform.
Proceedings of the Intelligent Distributed Computing XII, 2018

MORPHY: A Multiobjective Software Tool for Phylogenetic Inference of Protein Coded Sequences.
Proceedings of the International Conference on Information Technology & Systems, 2018

2017
Melanoma expression analysis with Big Data technologies.
PeerJ Prepr., 2017

Comparing multi-objective metaheuristics for solving a three-objective formulation of multiple sequence alignment.
Prog. Artif. Intell., 2017

DomESA: a novel approach for extending domain-oriented lexical relatedness calculations with domain-specific semantics.
J. Intell. Inf. Syst., 2017

Multiple Sequence Alignment with Multiobjective Metaheuristics. A Comparative Study.
Int. J. Intell. Syst., 2017

Enhancing semantic consistency in anti-fraud rule-based expert systems.
Expert Syst. Appl., 2017

Big Data. New approaches of modelling and management.
Comput. Stand. Interfaces, 2017

M2Align: parallel multiple sequence alignment with a multi-objective metaheuristic.
Bioinform., 2017

A Multi-objective Optimization Framework for Multiple Sequence Alignment with Metaheuristics.
Proceedings of the Bioinformatics and Biomedical Engineering, 2017

Design and architecture of the jMetaISP framework.
Proceedings of the Genetic and Evolutionary Computation Conference, 2017

Multi-objective Big Data Optimization with jMetal and Spark.
Proceedings of the Evolutionary Multi-Criterion Optimization, 2017

2016
A Fine Grain Sentiment Analysis with Semantics in Tweets.
Int. J. Interact. Multim. Artif. Intell., 2016

An ontology-based data integration approach for web analytics in e-commerce.
Expert Syst. Appl., 2016

A semantic model for electronic government and its enforcement in the Province of Misiones, Argentina.
Electron. Gov. an Int. J., 2016

tESA: a distributional measure for calculating semantic relatedness.
J. Biomed. Semant., 2016

Dione: An OWL representation of ICD-10-CM for classifying patients' diseases.
J. Biomed. Semant., 2016

DisMatch results for OAEI 2016.
Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016

Dynamic Multi-Objective Optimization with jMetal and Spark: A Case Study.
Proceedings of the Machine Learning, Optimization, and Big Data, 2016

Re-constructing Hidden Semantic Data Models by Querying SPARQL Endpoints.
Proceedings of the Database and Expert Systems Applications, 2016

A Study of Archiving Strategies in Multi-objective PSO for Molecular Docking.
Proceedings of the Swarm Intelligence - 10th International Conference, 2016

A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy.
Proceedings of the Algorithms for Computational Biology - Third International Conference, 2016

2015
A Repository of Semantic Open EHR Archetypes.
Int. J. Interact. Multim. Artif. Intell., 2015

kpath: integration of metabolic pathway linked data.
Database J. Biol. Databases Curation, 2015

Solving molecular flexible docking problems with metaheuristics: A comparative study.
Appl. Soft Comput., 2015

Un Modelo Ontológico para el Gobierno Electrónico de la Provincia de Misiones, Argentina.
Proceedings of the 1st Argentine Symposium on Ontologies and their Applications co-located with 44 Jornadas Argentinas de Informática (44JAIIO), 2015


Overview of the ImageCLEF 2015 liver CT annotation task.
Proceedings of the Working Notes of CLEF 2015, 2015

2014
BioSStore: A Client Interface for a Repository of Semantically Annotated Bioinformatics Web Services.
Open J. Semantic Web, 2014

Calculating semantic relatedness for biomedical use in a knowledge-poor environment.
BMC Bioinform., 2014

jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework.
Bioinform., 2014

2013
Semantic similarity measurement using historical google search patterns.
Inf. Syst. Frontiers, 2013

Sharing and executing linked data queries in a collaborative environment.
Bioinform., 2013

A DBTechNet project for VET teacher training on database SQL transactions.
Proceedings of the Balkan Conference in Informatics, 2013

2012
Smart Combination of Web Measures for Solving Semantic Similarity Problems.
Online Inf. Rev., 2012

An overview of current ontology meta-matching solutions.
Knowl. Eng. Rev., 2012

MaF: An Ontology Matching Framework.
J. Univers. Comput. Sci., 2012

KnoE: A Web Mining Tool to Validate Previously Discovered Semantic Correspondences.
J. Comput. Sci. Technol., 2012

Transparent mediation-based access to multiple yeast data sources using an ontology driven interface.
BMC Bioinform., 2012

TheMa: An API for Mining Linked Datasets.
Proceedings of the 16th Panhellenic Conference on Informatics, PCI 2012, 2012

Metabolic Pathway Data and Application Integration.
Proceedings of the Trends in Practical Applications of Agents and Multiagent Systems, 2012

Evaluating DBOWL: A Non-materializing OWL Reasoner based on Relational Database Technology.
Proceedings of the 1st International Workshop on OWL Reasoner Evaluation (ORE-2012), 2012

2011
Evaluation of two heuristic approaches to solve the ontology meta-matching problem.
Knowl. Inf. Syst., 2011

Social pathway annotation: extensions of the systems biology metabolic modelling assistant.
Briefings Bioinform., 2011

Bioqueries: a social community sharing experiences while querying biological linked data.
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Towards designing an efficient crawling window to analysis and annotate changes in linked data sources.
Proceedings of the 2011 EDBT/ICDT Workshop on Linked Web Data Management, 2011

2010
Reverse ontology matching.
SIGMOD Rec., 2010

YeastMed: an XML-Based System for Biological Data Integration of Yeast.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

TasTicWiki: A Semantic Wiki with Content Recommendation.
Proceedings of the 5th Workshop on Semantic Wikis, 2010

A More Specific Events Classification to Improve Crawling Techniques.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2010 Workshops, 2010

SB-KOM: Integration of Pathway Information with BioPax.
Proceedings of the Bioinformatics for Personalized Medicine, 2010

A Data Warehouse Approach to Semantic Integration of Pseudomonas Data.
Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

Statistical Study about Existing OWL Ontologies from a Significant Sample as Previous Step for their Alignment.
Proceedings of the CISIS 2010, 2010

DBTech EXT: Education and Hands-On Training for the Database Professional.
Proceedings of the Advances in Databases and Information Systems, 2010

2009
Extending SD-Core for Ontology-based Data Integration.
J. Univers. Comput. Sci., 2009

Towards a Scalable Infrastructure for Semantic Web Services Execution.
J. Softw., 2009

Protopia: a protein-protein interaction tool.
BMC Bioinform., 2009

KA-SB: from data integration to large scale reasoning.
BMC Bioinform., 2009

Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.
Bioinform., 2009

Towards an Ontology-based Mediation Framework for Integrating Biological Data.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

MaSiMe: A Customized Similarity Measure and Its Application for Tag Cloud Refactoring.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2009 Workshops, 2009

Semantically Enhanced Recommender Systems.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2009 Workshops, 2009

Boosting Annotated Web Services in SAWSDL.
Proceedings of the Distributed Computing, 2009

Complete OWL-DL Reasoning Using Relational Databases.
Proceedings of the Database and Expert Systems Applications, 20th International Conference, 2009

Semantic Fields: Finding Ontology Relationships.
Proceedings of the Database and Expert Systems Applications, 20th International Conference, 2009

2008
The Amine System Project: Systems Biology in Practice.
Proceedings of the Computational Intelligence in Bioinformatics, 2008

AMMO-Prot: amine system project 3D-model finder.
BMC Bioinform., 2008

KASBi: Knowledge-Based Analysis in Systems Biology.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

A Protégé Plugin for Querying and Reasoning on Persistent OWL Ontologies.
Proceedings of the 5th Workshop on Semantic Web Applications and Perspectives (SWAP2008), 2008

A Semantic Mediation Architecture for RDF Data Integration.
Proceedings of the 5th Workshop on Semantic Web Applications and Perspectives (SWAP2008), 2008

Optimizing Ontology Alignments by Using Genetic Algorithms.
Proceedings of the First International Workshop on Nature Inspired Reasoning for the Semantic Web, 2008

Extending ESB for Semantic Web Services Understanding.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2008 Workshops, 2008

SD-Core: A Semantic Middleware Applied to Molecular Biology.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2008 Workshops, 2008

SD-Core: Generic Semantic Middleware Components for the Semantic Web.
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2008

VSB: The Visual Semantic Browser.
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2008

DBOWL: Towards a Scalable and Persistent OWL Reasoner.
Proceedings of the Third International Conference on Internet and Web Applications and Services, 2008

ECQ: A Simple Query Language for the Semantic Web.
Proceedings of the 19th International Workshop on Database and Expert Systems Applications (DEXA 2008), 2008

Comparison of Textual Renderings of Ontologies for Improving Their Alignment.
Proceedings of the Second International Conference on Complex, 2008

2006
Bio-Broker: a tool for integration of biological data sources and data analysis tools.
Softw. Pract. Exp., 2006

Intelligent client for integrating bioinformatics services.
Bioinform., 2006

A Prototype for Discovering Compositions of Semantic Web Services.
Proceedings of the SWAP 2006, 2006

Automated Discovery of Compositions of Services Described with Separate Ontologies.
Proceedings of the Service-Oriented Computing, 2006

A Survey on Disk Oriented Querying and Reasoning on the Semantic Web.
Proceedings of the 22nd International Conference on Data Engineering Workshops, 2006

Distributed Execution of Workflows.
Proceedings of the Computational Science, 2006

Distributed Execution of Workflows in the INB.
Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005
Services Integration and Task-scheduling in Bioinformatics Grids.
Proceedings of the Parallel Computing: Current & Future Issues of High-End Computing, 2005

A Tool for Storing OWL Using Database Technology.
Proceedings of the OWLED*05 Workshop on OWL: Experiences and Directions, 2005

Arquitectura para la Clasificación y Composición de Servicios Web.
Proceedings of the Actas de las X Jornadas de Ingeniería del Software y Bases de Datos (JISBD 2005), 2005

A Design Methodology for Semantic Web Database-Based Systems.
Proceedings of the Third International Conference on Information Technology and Applications (ICITA 2005), 2005

A semantic tool for analyzing interaction among transcription factors.
Proceedings of the AC 2005, 2005

Bio-Broker: a biological data and services mediator system.
Proceedings of the AC 2005, 2005

Automatic Generation of Semantic Fields for Resource Discovery in the Semantic Web.
Proceedings of the Database and Expert Systems Applications, 16th International Conference, 2005

Applying Database Techniques to the Semantic Web.
Proceedings of the Encyclopedia of Database Technologies and Applications, 2005

Database Technologies on the Web.
Proceedings of the Encyclopedia of Information Science and Technology (5 Volumes), 2005

2004
Deep Crawling in the Semantic Web: In Search of Deep Knowledge.
Proceedings of the Web Information Systems, 2004

Solving Queries over Semantically Integrated Biological Data Sources.
Proceedings of the Advances in Web-Age Information Management: 5th International Conference, 2004

Towards Conceptual Mediation: A Semantic Architecture For Dynamic Integration of Heterogeneous Databases.
Proceedings of the ICEIS 2004, 2004

Semantic Integration of Digital Libraries.
Proceedings of the ICEIS 2004, 2004

Embedding Semantic Annotations into Dynamic Web Contents.
Proceedings of the 15th International Workshop on Database and Expert Systems Applications (DEXA 2004), with CD-ROM, 30 August, 2004

An Open Architecture for the Dynamic Integration of Biological Data Sources.
Proceedings of the 2nd International Conference Computing, 2004

Kreios: Towards Semantic Interoperable Systems.
Proceedings of the Advances in Information Systems, Third International Conference, 2004

2003
Putting the Semantic Web to Work with DB Technology.
IEEE Data Eng. Bull., 2003

Anotación Semántica de Documentos Web.
Proceedings of the VIII Jornadas Ingeniería del Software y Bases de Datos (JISBD 2003), 2003

Arquitectura para la Mediación Semántica.
Proceedings of the VIII Jornadas Ingeniería del Software y Bases de Datos (JISBD 2003), 2003

Database Management Issues in the Web Environment.
Proceedings of the Effective Databases for Text & Document Management., 2003

2002
Implicaciones del tipo de parser en la evaluación consultas Xquery.
Proceedings of the VII Jornadas de Ingeniería del Software y Bases de Datos (JISBD 2002), 2002

Integrity Issues in the Web: Beyond Distributed Databases.
Proceedings of the Database Integrity: Challenges and Solutions, 2002

2001
Semicomposición Distribuida.
Proceedings of the VI Jornadas de Ingeniería del Software y Bases de Datos (JISBD 2001), 2001

1999
Revisando las Téchnicas de Optimización de Consultas Recursivas Mediante la Propagación de Semicomposiciones.
Proceedings of the IV Jornadas de Ingeniería del Software y Bases de Datos (JISBD'99), 1999

1998
Querying the Web with Datalog.
Proceedings of the Third International Conference on Integrated Design and Process Technology, IDPT, 1998

1997
Recuperación de Información en la WWW: D<sup>3</sup>Web.
Proceedings of the II Jornadas de Investigación y Docencia en Bases de Datos, 1997

Concurrent Smart Evaluation of Datalog Queries.
Proceedings of the 1997 Joint Conf. on Declarative Programming, 1997

1996
Data Flow Parallel Evaluation of Datalog Queries.
Proceedings of the I Jornadas de Investigación y Docencia en Bases de Datos, 1996

Data Flow Evaluation of Datalog Queries.
Proceedings of the Workshop DDLP'96 on Deductive Databases and Logic Programming, 1996

1995
GENESIS: An Object-Oriented Framework for Simulation of Neural Network Models.
Proceedings of the Artificial Neural Nets and Genetic Algorithms, 1995

Hybridizing Genetic Algorithms with Branch and Bound Techniques for the Resolution of the TSP.
Proceedings of the Artificial Neural Nets and Genetic Algorithms, 1995

A Genetic Algorithm for Load Balancing in Parallel Query Evaluation for Deductive Relational Data Bases.
Proceedings of the Artificial Neural Nets and Genetic Algorithms, 1995

1994
Load Balancing and Query Optimization in DataFlow Parallel Evaluation of Datalog Programs.
Proceedings of the Proceedings 1994 International Conference on Parallel and Distributed Systems, 1994

D2: A Model for Datalog Parallel Evaluation.
Proceedings of the 1994 Joint Conference on Declarative Programming, 1994

1993
URANO: An Object-Oriented Artificial Neural Network Simulation Tool.
Proceedings of the New Trends in Neural Computation, 1993

Full Automatic ANN Design: A Genetic Approach.
Proceedings of the New Trends in Neural Computation, 1993

1991
Extending an Object Oriented Concurrent Logic Language for Neural Network Simulations.
Proceedings of the Artificial Neural Networks, 1991


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