The potential of the digital anatomist foundational model for assuring consistency in UMLS sources. - José L. V. Mejino Jr.; Cornelius Rosse (AMIA, 1998)

Research Paper: Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base. - Cornelius Rosse; José L. V. Mejino Jr.; Bharath R. Modayur; Rex M. Jakobovits; Kevin P. Hinshaw; James F. Brinkley (J. Am. Medical Informatics Assoc., 1998)

Influence of the Digital Anatomist Foundational Model on traditional representations of anatomical concepts. - Augusto V. Agoncillo; José L. V. Mejino Jr.; Cornelius Rosse (AMIA, 1999)

Conceptualization of anatomical spatial entities in the Digital Anatomist Foundational Model. - José L. V. Mejino Jr.; Cornelius Rosse (AMIA, 1999)

Foundational model of neuroanatomy: implications for the Human Brain Project. - Richard F. Martin; José L. V. Mejino Jr.; Douglas M. Bowden; James F. Brinkley; Cornelius Rosse (AMIA, 2001)

Representation of Structural Relationships in the Foundational Model of Anatomy. - José L. V. Mejino Jr.; Natalya Fridman Noy; Mark A. Musen; James F. Brinkley; Cornelius Rosse (AMIA, 2001)

The role of definitions in biomedical concept representation. - Joshua Michael; José L. V. Mejino Jr.; Cornelius Rosse (AMIA, 2001)

Proposed Classification of Cells in the Foundational Model of Anatomy. - Augusto V. Agoncillo; José L. V. Mejino Jr.; Kurt L. Rickard; Landon T. Detwiler; Cornelius Rosse (AMIA, 2003)

Efficient Web-Based Navigation of the Foundational Model of Anatomy. - Landon T. Detwiler; José L. V. Mejino Jr.; Cornelius Rosse; James F. Brinkley (AMIA, 2003)

The Evolving Neuroanatomical Component of the Foundational Model of Anatomy. - Richard F. Martin; Kurt L. Rickard; José L. V. Mejino Jr.; Augusto V. Agoncillo; James F. Brinkley; Cornelius Rosse (AMIA, 2003)

Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy. - José L. V. Mejino Jr.; Augusto V. Agoncillo; Kurt L. Rickard; Cornelius Rosse (AMIA, 2003)

A reference ontology for biomedical informatics: the Foundational Model of Anatomy. - Cornelius Rosse; José L. V. Mejino Jr. (J. Biomed. Informatics, 2003)

Symbolic modeling of structural relationships in the Foundational Model of Anatomy . - José L. V. Mejino Jr.; Cornelius Rosse (KR-MED, 2004)

Evolution of a Foundational Model of Physiology: Symbolic Representation for Functional Bioinformatics. - Daniel L. Cook; José L. V. Mejino Jr.; Cornelius Rosse (MedInfo, 2004)

A Relation-Centric Query Engine for the Foundational Model of Anatomy. - Landon T. Detwiler; Emily Chung; Ann Li; José L. V. Mejino Jr.; Augusto V. Agoncillo; James F. Brinkley; Cornelius Rosse; Linda G. Shapiro (MedInfo, 2004)

Problems and Solutions with Integrating Terminologies into Evolving Knowledge Bases. - Kurt L. Rickard; José L. V. Mejino Jr.; Richard F. Martin; Augusto V. Agoncillo; Cornelius Rosse (MedInfo, 2004)

Pushing the envelope: challenges in a frame-based representation of human anatomy. - Natalya Fridman Noy; Mark A. Musen; José L. V. Mejino Jr.; Cornelius Rosse (Data Knowl. Eng., 2004)

A Strategy for Improving and Integrating Biomedical Ontologies. - Cornelius Rosse; Anand Kumar 005; José L. V. Mejino Jr.; Daniel L. Cook; Landon T. Detwiler; Barry Smith 001 (AMIA, 2005)

Anatomical Information Science. - Barry Smith 001; José L. V. Mejino Jr.; Stefan Schulz 001; Anand Kumar 005; Cornelius Rosse (COSIT, 2005)

Application of Information Technology: Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base. - Linda G. Shapiro; Emily Chung; Landon Detwiler; José L. V. Mejino Jr.; Augusto V. Agoncillo; James F. Brinkley; Cornelius Rosse (J. Am. Medical Informatics Assoc., 2005)

Bridging Biological Ontologies and Biosimulation: The Ontology of Physics for Biology. - Daniel L. Cook; José L. V. Mejino Jr.; Maxwell Lewis Neal; John H. Gennari (AMIA, 2008)

FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology. - José L. V. Mejino Jr.; Daniel L. Rubin; James F. Brinkley (AMIA, 2008)

CARO - The Common Anatomy Reference Ontology. - Melissa A. Haendel; Fabian Neuhaus; David Osumi-Sutherland; Paula M. Mabee; José L. V. Mejino Jr.; Chris Mungall; Barry Smith 001 (Anatomy Ontologies for Bioinformatics, 2008)

The Foundational Model of Anatomy Ontology. - Cornelius Rosse; José L. V. Mejino Jr. (Anatomy Ontologies for Bioinformatics, 2008)

Relationship auditing of the FMA ontology. - Huanying Helen Gu; Duo Helen Wei; José L. V. Mejino Jr.; Gai Elhanan (J. Biomed. Informatics, 2009)

Content-specific auditing of a large scale anatomy ontology. - Ira J. Kalet; José L. V. Mejino Jr.; Vania Wang; Mark Whipple; James F. Brinkley (J. Biomed. Informatics, 2009)

Application of neuroanatomical ontologies for neuroimaging data annotation. - Jessica A. Turner; José L. V. Mejino Jr.; James F. Brinkley; Landon T. Detwiler; Hyo Jong Lee; Maryann E. Martone; Daniel L. Rubin (Frontiers Neuroinformatics, 2010)

HeartCyc: A Cardiac Cycle Process Ontology Based in the Ontology of Physics for Biology. - Daniel L. Cook; Michal Galdzicki; Maxwell Lewis Neal; José L. V. Mejino Jr.; John H. Gennari (ICBO, 2011)

The Foundational Model of Neuroanatomy Ontology: An Ontology Framework to Support Neuroanatomical Data Integration. - B. Nolan Nichols; José L. V. Mejino Jr.; James F. Brinkley (ICBO, 2011)

Ontological Labels for Automated Location of Left Ventricular Remodeling. - Shane Steinert-Threlkeld; Siamak Ardekani; José L. V. Mejino Jr.; Landon Detwiler; James F. Brinkley; Michael Halle; Ron Kikinis; Raimond L. Winslow; Michael I. Miller; J. Tilak Ratnanather (ICSC, 2011)

An Analysis of Multi-type Relational Interactions in FMA Using Graph Motifs with Disjointness Constraints. - Guo-Qiang Zhang 001; Lingyun Luo; Chimezie Thomas-Ogbuji; Cliff A. Joslyn; José Leonardo Villaraza Mejino Jr.; Satya Sanket Sahoo (AMIA, 2012)

Ontological labels for automated location of anatomical shape differences. - Shane Steinert-Threlkeld; Siamak Ardekani; José L. V. Mejino Jr.; Landon Detwiler; James F. Brinkley; Michael Halle; Ron Kikinis; Raimond L. Winslow; Michael I. Miller; J. Tilak Ratnanather (J. Biomed. Informatics, 2012)

Human Development Domain of the Ontology of Craniofacial Development and Malformation. - José L. V. Mejino Jr.; Ravensara S. Travillian; Timothy C. Cox; Linda G. Shapiro; James F. Brinkley (ICBO, 2013)

An analysis of FMA using structural self-bisimilarity. - Lingyun Luo; José L. V. Mejino Jr.; Guo-Qiang Zhang 001 (J. Biomed. Informatics, 2013)

Neuroanatomical domain of the foundational model of anatomy ontology. - B. Nolan Nichols; José L. V. Mejino Jr.; Landon Detwiler; Trond T. Nilsen; Maryann E. Martone; Jessica A. Turner; Daniel L. Rubin; James F. Brinkley (J. Biomed. Semant., 2014)

Converting the Foundational Model of Anatomy to OWL2. - Landon T. Detwiler; José L. V. Mejino Jr.; James F. Brinkley (AMIA, 2015)

Development of a Novel Markov Chain Model for the Prediction of Head and Neck Squamous Cell Carcinoma Dissemination. - Hyunggu Jung; Anthony Law; Eli Grunblatt; Lucy Lu Wang; Aaron S. Kusano; José L. V. Mejino Jr.; Mark Whipple (AMIA, 2016)

Multi-species Ontologies of the Craniofacial Musculoskeletal System. - José Leonardo Villaraza Mejino Jr.; James F. Brinkley; Timothy C. Cox; Landon Detwiler (ICBO/BioCreative, 2016)

From frames to OWL2: Converting the Foundational Model of Anatomy. - Landon T. Detwiler; José L. V. Mejino Jr.; James F. Brinkley (Artif. Intell. Medicine, 2016)

Cross-species Mapping of Human and Mouse Craniofacial Structures. - José L. V. Mejino Jr.; Landon T. Detwiler; Timothy C. Cox; James F. Brinkley (AMIA, 2017)

From SNOMED CT to Uberon: Transferability of evaluation methodology between similarly structured ontologies. - Gai Elhanan; Christopher Ochs; José L. V. Mejino Jr.; Hao Liu 025; Christopher J. Mungall; Yehoshua Perl (Artif. Intell. Medicine, 2017)

Evaluating the granularity balance of hierarchical relationships within large biomedical terminologies towards quality improvement. - Lingyun Luo; Ling Tong 002; Xiaoxi Zhou; José Leonardo Villaraza Mejino Jr.; Chunping Ouyang; Yongbin Liu (J. Biomed. Informatics, 2017)