A Methodology to Represent Logical Network Topology Information. - José Luís Oliveira; Joaquim Arnaldo Martins (NOMS, 1994)

A Management Architecture Based on Network Topology Information. - José Luís Oliveira; Joaquim Arnaldo Martins (J. Netw. Syst. Manag., 1994)

New Services on an Advanced Internet. - Rui L. Aguiar; José Luís Oliveira (ECMAST, 1999)

Issues on Internet Evolution and Management. - Rui L. Aguiar; José Luís Oliveira (ICEIS, 1999)

Software Agents in Network Management. - Rui Pedro Lopes; José Luís Oliveira (ICEIS, 1999)

A Remote Meteorological Data Service Supported on CORBA. - Jorge S. C. Mota; José Luís Oliveira; Fernando Ramos (ICEIS, 1999)

On the Use of Mobility in Distributed Network Management. - Rui Pedro Lopes; José Luís Oliveira (HICSS, 2000)

Network and Desktop Management Convergence. - José Luís Oliveira; Rui L. Aguiar (HICSS, 2000)

A Trusted Brokering Service for PKI Interoperability and Thin-Clients Integration. - Carlos M. A. Costa; José Luís Oliveira; Augusto Silva (ICEIS (2), 2001)

A New Mechanism for Distributed Managers Persistence. - Rui Pedro Lopes; José Luís Oliveira (ICEIS (2), 2001)

QoS Negotiation Based on Management Delegates. - José Luís Oliveira; Rui L. Aguiar (ICEIS (2), 2001)

SNMP Management of MASIF Platforms. - Rui Pedro Lopes; José Luís Oliveira (Integrated Network Management, 2001)

Multi-management Schemes for MAF Platforms. - Rui Pedro Lopes; José Luís Oliveira (MATA, 2002)

An integrated access interface to multimedia EPR. - Carlos Costa 001; José Luís Oliveira; Augusto Silva; Vasco Gama Ribeiro (CARS, 2003)

A New User-Oriented Model to Manage Multiple Digital Credentials. - Carlos M. A. Costa; José Luís Oliveira; Augusto Silva (ICEIS (4), 2003)

Application Scenarios for Distributed Management Using Snmp Expressions. - Rui Pedro Lopes; José Luís Oliveira (ICEIS (4), 2003)

Agentapi: An Api for the Development of Managed Agents. - Rui Pedro Lopes; José Luís Oliveira (ICEIS (4), 2003)

Policies Composition Through Graphical Components. - Vitor Roque; José Luís Oliveira; Rui Pedro Lopes (ICEIS (4), 2003)

Critical Information Systems Authentication Based on PKC and Biometrics. - Carlos Costa 001; José Luís Oliveira; Augusto Silva (ICWE, 2003)

Electronic Patient Record Virtually Unique Based on a Crypto Smart Card. - Carlos Costa 001; José Luís Oliveira; Augusto Silva (ICWE, 2003)

Delegation of Expressions for Distributed SNMP Information Processing. - Rui Pedro Lopes; José Luís Oliveira (Integrated Network Management, 2003)

A Mobile Agent Manager. - Rui Pedro Lopes; José Luís Oliveira (MATA, 2003)

A New Concept for an Integrated Healthcare Access Model. - Carlos Costa 001; José Luís Oliveira; Augusto Silva; Vasco Gama Ribeiro (MIE, 2003)

E-Services in Mission-Critical Organizations: Identification Enforcement. - Carlos Costa 001; José Luís Oliveira; Augusto Silva (ICEIS (4), 2004)

A Business Process Model for Public Health Information Systems: A Governmental Perspective. - Daniel Ferreira Polónia; Ilídio Oliveira; José Luís Oliveira (ICEIS (3), 2004)

Solving Transactional Control in Current Management Frameworks. - Vitor Roque; José Luís Oliveira; Rui Pedro Lopes (ICEIS (4), 2004)

DiseaseCard: A Web-Based Tool for the Collaborative Integration of Genetic and Medical Information. - José Luís Oliveira; Gaspar S. Dias; Ilídio Oliveira; Patrícia Rocha; Isabel Hermosilla; Javier Vicente; Inmaculada Spiteri; Fernando Martín-Sánchez; António Sousa Pereira (ISBMDA, 2004)

NeoScreen: A Software Application for MS/MS Newborn Screening Analysis. - Miguel Pinheiro; José Luís Oliveira; Manuel A. S. Santos; Hugo Rocha; M. Luis Cardoso; Laura Vilarinho (ISBMDA, 2004)

Policy-Based Network Management in an Integrated Mobile Network. - José Luís Oliveira; Pedro Gonçalves; Wojciech Dziunikowski; Jacek Wszolek; Sonny Rasmussen; Rui Pedro Lopes; Vitor Roque (AICT/SAPIR/ELETE, 2005)

A WBEM based solution for a 4G network integrated management. - Pedro Gonçalves; José Luís Oliveira; Rui L. Aguiar (ICAS/ICNS, 2005)

Active Traffic Monitoring for Heterogeneous Environments. - Hélder Veiga; Teresa Pinho; José Luís Oliveira; Rui Valadas; Paulo Salvador 001; António Nogueira (ICN (1), 2005)

Executable Graphics for PBNM. - Rui Pedro Lopes; Nuno Raimundo; Maria João Varanda Pereira; José Luís Oliveira; Vitor Roque (IPOM, 2005)

Data Management and Visualization Issues in a Fully Digital Echocardiography Laboratory. - Carlos Costa 001; José Luís Oliveira; Augusto Silva; Vasco Gama Ribeiro; José Ribeiro 002 (ISBMDA, 2005)

Integration of Genetic and Medical Information Through a Web Crawler System. - Gaspar S. Dias; José Luís Oliveira; Francisco-Javier Vicente; Fernando Martín-Sánchez (ISBMDA, 2005)

Architecture Evaluation for the Implementation of a Regional Integrated Electronic Health Record. - Daniel Ferreira Polónia; Carlos Costa 001; José Luís Oliveira (MIE, 2005)

A Prospective Study on the Integration of Microarray Data in HIS/EPR. - Daniel Ferreira Polónia; Joel Arrais; José Luís Oliveira (ISBMDA, 2006)

Integrating Medical and Genomic Data: a Sucessful Example for Rare Diseases. - Gaspar S. Dias; José Luís Oliveira; Javier Vicente; Fernando Martín-Sánchez (MIE, 2006)

A MODEL to Optimize the Use of Imaging Equipment and Human Skills Scattered in Very Large Geographical Areas. - Daniel Ferreira Polónia; Carlos M. A. Costa; José Luís Oliveira (ICEIS (4), 2007)

GeneBrowser: an approach for integration and functional classification of genomics data. - Joel Arrais; Bruno Santos; João Fernandes; Laura Carreto; Manuel A. S. Santos; José Luís Oliveira (J. Integr. Bioinform., 2007)

Current Perspectives on PACS and a Cardiology Case Study. - Carlos Costa 001; Augusto Silva; José Luís Oliveira (Advanced Computational Intelligence Paradigms in Healthcare - 2, 2007)

Design of Microarray Probes for Detection of Mutations. - Pedro Almeida; Laura Carreto; José Luís Oliveira (BIOTECHNO, 2008)

A Microarray Information Database. - Joel Arrais; Laura Carreto; Manuel A. S. Santos; José Luís Oliveira (BIOTECHNO, 2008)

Exploiting Codon-Triplets Association for Genome Primary Structure Analysis. - José P. Lousado; Gabriela R. Moura; Manuel A. S. Santos; José Luís Oliveira (BIOTECHNO, 2008)

Studying the Evolution of Codon Context in Conserved Gene Sequences. - Miguel Pinheiro; José Luís Oliveira; Gabriela R. Moura; Manuel A. S. Santos (BIOTECHNO, 2008)

Dynamic service integration using web-based workflows. - Pedro Lopes 002; Joel Arrais; José Luís Oliveira (iiWAS, 2008)

Improving Literature Searches in Gene Expression Studies. - Joel Arrais; João G. L. M. Rodrigues; José Luís Oliveira (IWPACBB, 2008)

Syntactic Parsing for Bio-molecular Event Detection from Scientific Literature. - Sérgio Matos; Anabela Barreiro; José Luís Oliveira (EPIA, 2009)

Link Integrator - A Link-based Data Integration Architecture. - Pedro Lopes 002; Joel Arrais; José Luís Oliveira (KDIR, 2009)

Arabella - A Directed Web Crawler. - Pedro Lopes 002; Davide Pinto; David Campos 001; José Luís Oliveira (KDIR, 2009)

Evaluation of policy-based admission control mechanisms in NGN. - Pedro Gonçalves; Ricardo Azevedo; Diogo Gomes 001; José Luís Oliveira; Rui L. Aguiar (ICT, 2009)

A graphical user interface for policy composition in CIM-SPL. - Pedro Gonçalves; Carlos Figueira; Ricardo Azevedo; Rui L. Aguiar; José Luís Oliveira (ICUMT, 2009)

An evaluation of network management protocols. - Pedro Gonçalves; José Luís Oliveira; Rui L. Aguiar (Integrated Network Management, 2009)

DynamicFlow: A Client-Side Workflow Management System. - Pedro Lopes 002; Joel Arrais; José Luís Oliveira (IWANN (2), 2009)

Analysing the Evolution of Repetitive Strands in Genomes. - José P. Lousado; José Luís Oliveira; Gabriela R. Moura; Manuel A. S. Santos (IWANN (2), 2009)

Indexing and retrieving DICOM data in disperse and unstructured archives. - Carlos Costa 001; Filipe Freitas; Marco Pereira; Augusto Silva; José Luís Oliveira (Int. J. Comput. Assist. Radiol. Surg., 2009)

Design, development, exploitation and assessment of a Cardiology Web PACS. - Carlos Costa 001; José Luís Oliveira; Augusto Silva; Vasco Gama Ribeiro; José Ribeiro 002 (Comput. Methods Programs Biomed., 2009)

Towards an EHR Architecture for Mobile Citizens. - Tiago Pedrosa; Rui Pedro Lopes; João C. Santos; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2010)

Email-P2P Gateway to Distributed Medical Imaging Repositories. - Luís S. Ribeiro; Luís Bastião; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2010)

Modelling a Portable Personal Health Record. - João C. Santos; Tiago Pedrosa; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2010)

Recognition of Gene/Protein Names using Conditional Random Fields. - David Campos 001; Sérgio Matos; José Luís Oliveira (KDIR, 2010)

Improving Cross Mapping in Biomedical Databases. - Joel Arrais; João E. Pereira; Pedro Lopes 002; Sérgio Matos; José Luís Oliveira (IWPACBB, 2010)

An Application for Studying Tandem Repeats in Orthologous Genes. - José P. Lousado; José Luís Oliveira; Gabriela R. Moura; Manuel A. S. Santos (IWPACBB, 2010)

Expanding Gene-Based PubMed Queries. - Sérgio Matos; Joel Arrais; José Luís Oliveira (IWPACBB, 2010)

A Holistic Approach for Integrating Genomic Variation Information. - Pedro Lopes 002; José Luís Oliveira (JBI, 2010)

GeneBrowser 2: an application to explore and identify common biological traits in a set of genes. - Joel Arrais; João Fernandes; João E. Pereira; José Luís Oliveira (BMC Bioinform., 2010)

Concept-based query expansion for retrieving gene related publications from MEDLINE. - Sérgio Matos; Joel Arrais; João Maia-Rodrigues; José Luís Oliveira (BMC Bioinform., 2010)

Hybrid Electronic Health Records. - Tiago Pedrosa; Rui Pedro Lopes; João C. Santos; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2011)

On the Use of openEHR in a Portable PHR. - Cândido Santos; Tiago Pedrosa; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2011)

Towards knowledge federation in biomedical applications. - Pedro Lopes 002; José Luís Oliveira (I-SEMANTICS, 2011)

An IDE for NETCONF management applications. - Paulo Tavares; Pedro Gonçalves; José Luís Oliveira (LANOMS, 2011)

Prioritizing Literature Search Results Using a Training Set of Classified Documents. - Sérgio Matos; José Luís Oliveira (PACBB, 2011)

COEUS: a semantic web application framework. - Pedro Lopes 002; José Luís Oliveira (SWAT4LS, 2011)

Challenges Storing and Representing Biomedical Data. - Joel Arrais; Pedro Lopes 002; José Luís Oliveira (USAB, 2011)

Dicoogle - an Open Source Peer-to-Peer PACS. - Carlos Costa 001; Carlos Ferreira 001; Luís Bastião; Luís S. Ribeiro; Augusto Silva; José Luís Oliveira (J. Digit. Imaging, 2011)

Classification methods for finding articles describing protein-protein interactions in PubMed. - Sérgio Matos; José Luís Oliveira (J. Integr. Bioinform., 2011)

Improving the performance of the iterative signature algorithm for the identification of relevant patterns. - Adelaide Freitas; Vera Afreixo; Miguel Pinheiro; José Luís Oliveira; Gabriela R. Moura; Manuel A. S. Santos (Stat. Anal. Data Min., 2011)

Data Integration Solution for Organ-Specific Studies: An Application for Oral Biology. - José Melo; Joel P. Arrais; Edgar D. Coelho; Pedro Lopes 002; Nuno Rosa; Maria José Correia; Marlene Barros; José Luís Oliveira (BIOSTEC (Selected Papers), 2012)

Web Information System for the Study of Oral Health. - José Melo; Joel Arrais; Pedro Lopes 002; Nuno Rosa; Maria José Correia; Marlene Barros; José Luís Oliveira (HEALTHINF, 2012)

Gathering and Managing Genotype and Phenotype Information about Rare Diseases Patients. - Rafael Mendonça; Pedro Lopes 002; Hugo Rocha; Jorge Oliveira 003; Laura Vilarinho; Rosário Santos; José Luís Oliveira (HEALTHINF, 2012)

A Secure Personal Health Record Repository. - Tiago Pedrosa; Rui Pedro Lopes; João C. Santos; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2012)

A DICOM Relay Service Supported on Cloud Resources. - Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2012)

An openEHR Repository based on a Native XML Database. - Linda Velte; Tiago Pedrosa; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2012)

Dicoogle relay - a cloud communications bridge for medical imaging. - Carlos Viana-Ferreira; Carlos Costa 001; José Luís Oliveira (CBMS, 2012)

Parameter Influence in Genetic Algorithm Optimization of Support Vector Machines. - Paulo Gaspar; Jaime G. Carbonell; José Luís Oliveira (PACBB, 2012)

A Rare Disease Patient Manager. - Pedro Lopes 002; Rafael Mendonça; Hugo Rocha; Jorge Oliveira 003; Laura Vilarinho; Rosário Santos; José Luís Oliveira (PACBB, 2012)

Harmonization of gene/protein annotations: towards a gold standard MEDLINE. - David Campos 001; Sérgio Matos; Ian Lewin; José Luís Oliveira; Dietrich Rebholz-Schuhmann (Bioinform., 2012)

EuGene: maximizing synthetic gene design for heterologous expression. - Paulo Gaspar; José Luís Oliveira; Jörg Frommlet; Manuel A. S. Santos; Gabriela R. Moura (Bioinform., 2012)

COEUS: "semantic web in a box" for biomedical applications. - Pedro Lopes 002; José Luís Oliveira (J. Biomed. Semant., 2012)

A PACS archive architecture supported on cloud services. - Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (Int. J. Comput. Assist. Radiol. Surg., 2012)

Clustering of distinct PACS archives using a cooperative peer-to-peer network. - Luís S. Ribeiro; Carlos Costa 001; José Luís Oliveira (Comput. Methods Programs Biomed., 2012)

An integrative approach for codon repeats evolutionary analyses. - José Paulo Lousado; José Luís Oliveira; Gabriela R. Moura; Manuel A. S. Santos (Int. J. Data Min. Bioinform., 2012)

Telecardiology through ubiquitous Internet services. - Carlos Costa 001; José Luís Oliveira (Int. J. Medical Informatics, 2012)

A study of encoding overhead in network management protocols. - Pedro Gonçalves; José Luís Oliveira; Rui L. Aguiar (Int. J. Netw. Manag., 2012)

On the parameter optimization of Support Vector Machines for binary classification. - Paulo Gaspar; Jaime G. Carbonell; José Luís Oliveira (J. Integr. Bioinform., 2012)

Automatic Filtering and Substantiation of Drug Safety Signals. - Anna Bauer-Mehren; Erik M. van Mulligen; Paul Avillach; María del Carmen Carrascosa; Ricard García-Serna; Janet Piñero González; Bharat Singh; Pedro Lopes 002; José Luís Oliveira; Gayo Diallo; Ernst Ahlberg Helgee; Scott Boyer; et al. (PLoS Comput. Biol., 2012)

A RESTful Image Gateway for Multiple Medical Image Repositories. - Frederico Valente; Carlos Viana-Ferreira; Carlos Costa 001; José Luís Oliveira (IEEE Trans. Inf. Technol. Biomed., 2012)

Integrating echocardiogram reports with medical imaging. - Luís A. Bastião Silva; Samuel Campos; Carlos Costa 001; José Luís Oliveira (CBMS, 2013)

A multi-domain platform for medical imaging. - Carlos Viana-Ferreira; Carlos Costa 001; José Luís Oliveira (CBMS, 2013)

Structuring and Exploring the Biomedical Literature Using Latent Semantics. - Sérgio Matos; Hugo Araújo; José Luís Oliveira (DCAI, 2013)

A DICOM viewer based on web technology. - Eriksson J. Melicio Monteiro; Carlos Costa 001; José Luís Oliveira (Healthcom, 2013)

Leveraging XDS-I and PIX workflows for validating cross-enterprise patient identity linkage. - Luís S. Ribeiro; Frederico Honorio; José Luís Oliveira; Carlos Costa 001 (Healthcom, 2013)

Exploring nanopublications integration in pharmacovigilance scenarios. - Pedro Sernadela; Pedro Lopes 002; José Luís Oliveira (Healthcom, 2013)

An Agile Framework to Support Distributed Medical Imaging Scenarios. - Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (ICHI, 2013)

Computational Approach to Predict Inter-Species Oral Protein-Protein Interactions. - Edgar D. Coelho; Joel Arrais; Sérgio Matos; Nuno Rosa; Maria José Correia; Marlene Barros; José Luís Oliveira (IWBBIO, 2013)

Representation of Semantic Networks of Biomedical Terms. - Andre Vechina; Joel Arrais; José Luís Oliveira (IWBBIO, 2013)

Enabling Outsourcing XDS for Imaging on the Public Cloud. - Luís S. Ribeiro; Renato P. Rodrigues; Carlos Costa 001; José Luís Oliveira (MedInfo, 2013)

Quantitative Characterization of Protein Networks of the Oral Cavity. - Fernanda Correia Barbosa; Joel P. Arrais; José Luís Oliveira (PACBB, 2013)

Analysing Relevant Diseases from Iberian Tweets. - Víctor M. Prieto; Sérgio Matos; Manuel Álvarez; Fidel Cacheda; José Luís Oliveira (PACBB, 2013)

Semantic Rule Processing for Real-time Data Integration. - Pedro Lopes 002; José Luís Oliveira (SWAT4LS, 2013)

Exploring Nanopublishing with COEUS. - Rui Pedro Lopes; Pedro Sernadela; José Luís Oliveira (SWAT4LS, 2013)

BeCAS: biomedical concept recognition services and visualization. - Tiago Nunes; David Campos 001; Sérgio Matos; José Luís Oliveira (Bioinform., 2013)

Gimli: open source and high-performance biomedical name recognition. - David Campos 001; Sérgio Matos; José Luís Oliveira (BMC Bioinform., 2013)

A modular framework for biomedical concept recognition. - David Campos 001; Sérgio Matos; José Luís Oliveira (BMC Bioinform., 2013)

DICOM relay over the cloud. - Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (Int. J. Comput. Assist. Radiol. Surg., 2013)

An innovative portal for rare genetic diseases research: The semantic Diseasecard. - Pedro Lopes 002; José Luís Oliveira (J. Biomed. Informatics, 2013)

A common API for delivering services over multi-vendor cloud resources. - Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (J. Syst. Softw., 2013)

Medical imaging archiving: A comparison between several NoSQL solutions. - Luís A. Bastião Silva; Louis Beroud; Carlos Costa 001; José Luís Oliveira (BHI, 2014)

Extracting Sentences Describing Biomolecular Events from the Biomedical Literature. - Tiago Nunes; Sérgio Matos; José Luís Oliveira (DCAI, 2014)

Semantic Search over DICOM Repositories. - Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (ICHI, 2014)

Normalizing medical imaging archives for dose quality assurance and productivity auditing. - Luís António Bastião Silva; Luís S. Ribeiro; Carlos Costa 001; José Luís Oliveira; Milton Santos 001 (MeMeA, 2014)

Multi-provider Architecture for Cloud Outsourcing of Medical Imaging Repositories. - Tiago Marques Godinho; Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (MIE, 2014)

Screening Radiation Exposure for Quality Assurance. - Luís A. Bastião Silva; Luís S. Ribeiro; Milton Santos 001; Carlos Costa 001; José Luís Oliveira (MIE, 2014)

Mutation Analysis in PARK2 Gene Uncovers Patterns of Associated Genetic Variants. - Luísa Castro; José Luís Oliveira; Raquel M. Silva (PACBB, 2014)

A Nanopublishing Architecture for Biomedical Data. - Pedro Sernadela; Eelke van der Horst; Mark Thompson 002; Pedro Lopes 002; Marco Roos; José Luís Oliveira (PACBB, 2014)

BioinformaticsUA: Concept Recognition in Clinical Narratives Using a Modular and Highly Efficient Text Processing Framework. - Sérgio Matos; Tiago Nunes; José Luís Oliveira (SemEval@COLING, 2014)

Egas: a collaborative and interactive document curation platform. - David Campos 001; Jóni Lourenço; Sérgio Matos; José Luís Oliveira (Database J. Biol. Databases Curation, 2014)

geneCommittee: a web-based tool for extensively testing the discriminatory power of biologically relevant gene sets in microarray data classification. - Miguel Reboiro-Jato; Joel Arrais; José Luís Oliveira; Florentino Fdez-Riverola (BMC Bioinform., 2014)

Computational prediction of the human-microbial oral interactome. - Edgar D. Coelho; Joel Arrais; Sérgio Matos; Carlos Pereira; Nuno Rosa; Maria José Correia; Marlene Barros; José Luís Oliveira (BMC Syst. Biol., 2014)

A Centralized Platform for Geo-Distributed PACS Management. - Luís A. Bastião Silva; Renato P. Pinho; Luís S. Ribeiro; Carlos Costa 001; José Luís Oliveira (J. Digit. Imaging, 2014)

Sensor-Based Architecture for Medical Imaging Workflow Analysis. - Luís A. Bastião Silva; Samuel Campos; Carlos Costa 001; José Luís Oliveira (J. Medical Syst., 2014)

TrigNER: automatically optimized biomedical event trigger recognition on scientific documents. - David Campos 001; Quoc-Chinh Bui; Sérgio Matos; José Luís Oliveira (Source Code Biol. Medicine, 2014)

XDS-I Outsourcing Proxy: Ensuring Confidentiality While Preserving Interoperability. - Luís S. Ribeiro; Carlos Viana-Ferreira; José Luís Oliveira; Carlos Costa 001 (IEEE J. Biomed. Health Informatics, 2014)

Convolutional neural networks for mammography mass lesion classification. - John Edison Arevalo Ovalle; Fabio A. González 001; Raúl Ramos-Pollán; José Luís Oliveira; Miguel Ángel Guevara-López (EMBC, 2015)

Uncovering microbial duality within human microbiomes: A novel algorithm for the analysis of host-pathogen interactions. - Edgar D. Coelho; Joel P. Arrais; José Luís Oliveira (EMBC, 2015)

A machine learning methodology for medical imaging anonymization. - Eriksson J. Melicio Monteiro; Carlos Costa 001; José Luís Oliveira (EMBC, 2015)

Ann2RDF: moving annotations to semantic web. - Pedro Sernadela; Sérgio Matos; José Luís Oliveira (iiWAS, 2015)

New Insights in Echocardiography Based Left-Ventricle Dynamics Assessment. - Susana Brás; Augusto Silva; José Ribeiro 002; José Luís Oliveira (IWBBIO (1), 2015)

An Event-Driven Architecture for Biomedical Data Integration and Interoperability. - Pedro Lopes 002; José Luís Oliveira (IWBBIO (2), 2015)

A Semantic Layer for Unifying and Exploring Biomedical Document Curation Results. - Pedro Sernadela; Pedro Lopes 002; David Campos 001; Sérgio Matos; José Luís Oliveira (IWBBIO (1), 2015)

Architecture to Summarize Patient-Level Data Across Borders and Countries. - Luís A. Bastião Silva; Carlos Días; Johan van der Lei; José Luís Oliveira (MedInfo, 2015)

A Recommender System for Medical Imaging Diagnostic. - Eriksson J. Melicio Monteiro; Frederico Valente; Carlos Costa 001; José Luís Oliveira (MIE, 2015)

BioinformaticsUA: Machine Learning and Rule-Based Recognition of Disorders and Clinical Attributes from Patient Notes. - Sérgio Matos; José Sequeira; José Luís Oliveira (SemEval@NAACL-HLT, 2015)

i2x: An Automated Real-Time Integration and Interoperability Platform (Short Paper). - Pedro Lopes 002; Luís Bastião; José Luís Oliveira (SOCA, 2015)

An automated real-time integration and interoperability framework for bioinformatics. - Pedro Lopes 002; José Luís Oliveira (BMC Bioinform., 2015)

An Overview of Biomolecular Event Extraction from Scientific Documents. - Jorge A. Vanegas; Sérgio Matos; Fabio A. González 001; José Luís Oliveira (Comput. Math. Methods Medicine, 2015)

Computational methodology for predicting the landscape of the human-microbial interactome region level influence. - Edgar D. Coelho; André M. Santiago; Joel P. Arrais; José Luís Oliveira (J. Bioinform. Comput. Biol., 2015)

A document processing pipeline for annotating chemical entities in scientific documents. - David Campos 001; Sérgio Matos; José Luís Oliveira (J. Cheminformatics, 2015)

Normalizing Heterogeneous Medical Imaging Data to Measure the Impact of Radiation Dose. - Luís A. Bastião Silva; Luís S. Ribeiro; Milton Santos 001; Nuno Neves 003; Dulce Francisco; Carlos Costa 001; José Luís Oliveira (J. Digit. Imaging, 2015)

Prediction of Cancer using Network Topological Features. - Fernanda Brito Correia; Joel P. Arrais; José Luís Oliveira (BIOINFORMATICS, 2016)

Semantic Knowledge Base Construction from Radiology Reports. - Eriksson J. Melicio Monteiro; Pedro Sernadela; Sérgio Matos; Carlos Costa 001; José Luís Oliveira (HEALTHINF, 2016)

Ensemble-Based Methodology for the Prediction of Drug-Target Interactions. - Edgar D. Coelho; Joel P. Arrais; José Luís Oliveira (CBMS, 2016)

Caching and Prefetching Images in a Web-Based DICOM Viewer. - Eriksson J. Melicio Monteiro; Carlos Costa 001; José Luís Oliveira; David Campos 001; Luís A. Bastião Silva (CBMS, 2016)

A Curation Pipeline and Web-Services for PDF Documents. - André Santos; Sérgio Matos; David Campos 001; José Luís Oliveira (SMBM, 2016)

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID. - Sun Kim; Rezarta Islamaj Dogan; Andrew Chatr-aryamontri; Christie S. Chang; Rose Oughtred; Jennifer M. Rust; Riza Batista-Navarro; Jacob Carter; Sophia Ananiadou; Sérgio Matos; André Santos; David Campos 001; et al. (Database J. Biol. Databases Curation, 2016)

Mining clinical attributes of genomic variants through assisted literature curation in Egas. - Sérgio Matos; David Campos 001; Renato P. Pinho; Raquel M. Silva; Matthew E. Mort; David N. Cooper; José Luís Oliveira (Database J. Biol. Databases Curation, 2016)

Corrigendum: EuGene: maximizing synthetic gene design for heterologous expression. - Paulo Gaspar; José Luís Oliveira; Jörg Frommlet; Manuel A. S. Santos; Gabriela R. Moura (Bioinform., 2016)

Representation learning for mammography mass lesion classification with convolutional neural networks. - John Edison Arevalo Ovalle; Fabio A. González 001; Raúl Ramos-Pollán; José Luís Oliveira; Miguel Ángel Guevara-López (Comput. Methods Programs Biomed., 2016)

Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction. - Edgar D. Coelho; Joel P. Arrais; José Luís Oliveira (PLoS Comput. Biol., 2016)

A semantic-based workflow for biomedical literature annotation. - Pedro Sernadela; José Luís Oliveira (Database J. Biol. Databases Curation, 2017)

General guidelines for biomedical software development. - Luís Bastião Silva; Rafael C. Jiménez; Niklas Blomberg; José Luís Oliveira (F1000Research, 2017)

Intelligent generator of big data medical imaging repositories. - Tiago Marques Godinho; Carlos Costa 001; José Luís Oliveira (IET Softw., 2017)

A De-Identification Pipeline for Ultrasound Medical Images in DICOM Format. - Eriksson J. Melicio Monteiro; Carlos Costa 001; José Luís Oliveira (J. Medical Syst., 2017)

SCALEUS: Semantic Web Services Integration for Biomedical Applications. - Pedro Sernadela; Lorena González-Castro; José Luís Oliveira (J. Medical Syst., 2017)

A Modular Workflow Management Framework. - João Rafael Almeida; Ricardo F. Ribeiro; José Luís Oliveira (HEALTHINF, 2018)

A Computational Pipeline for Sepsis Patients' Stratification and Diagnosis. - David Campos 001; Renato P. Pinho; Ute Neugebauer; Jürgen Popp; José Luís Oliveira (HEALTHINF, 2018)

A Methodology to Perform Semi-automatic Distributed EHR Database Queries. - Olga Fajarda; Luís A. Bastião Silva; Peter R. Rijnbeek; Michel Van Speybroeck; José Luís Oliveira (HEALTHINF, 2018)

Exploring the Value of Electronic Health Records from Multiple Datasets. - Olga Fajarda; Alina Trifan; Michel Van Speybroeck; Peter R. Rijnbeek; José Luís Oliveira (BIOSTEC (Selected Papers), 2018)

Simplifying the Digitization of Clinical Protocols for Diabetes Management. - João Rafael Almeida; Joana Guimaraes; José Luís Oliveira (CBMS, 2018)

Services Orchestration and Workflow Management in Distributed Medical Imaging Environments. - João Rafael Almeida; Tiago Marques Godinho; Luís A. Bastião Silva; Carlos Costa 001; José Luís Oliveira (CBMS, 2018)

A FAIR Marketplace for Biomedical Data Custodians and Clinical Researchers. - Alina Trifan; José Luís Oliveira (CBMS, 2018)

Smartphone as data collector in health monitoring. - Maryse Oliveira; José Luís Oliveira (DATA, 2018)

Automated ICD-9-CM medical coding of diabetic patient's clinical reports. - Vitor Pereira; Sérgio Matos; José Luís Oliveira (DATA, 2018)

Simplifying biomedical data sharing through a web portal generator. - Andre Malta; José Luís Oliveira (HealthCom, 2018)

Fighting Fire with Fire: Computational Prediction of Microbial Targets for Bacteriocins. - Edgar D. Coelho; Joel P. Arrais; José Luís Oliveira (IWBBIO (1), 2018)

Biomedical Informatics - How to Choose the Best Tool for Each Task. - Fábio Maia; Luís A. Bastião Silva; José Luís Oliveira (MIE, 2018)

A Methodology for Fine-Grained Access Control in Exposing Biomedical Data. - Alina Trifan; Johan van der Lei; Carlos Díaz; José Luís Oliveira (MIE, 2018)

MONTRA: An agile architecture for data publishing and discovery. - Luís A. Bastião Silva; Alina Trifan; José Luís Oliveira (Comput. Methods Programs Biomed., 2018)

COEUS 2.0: automated platform to integrate and publish biomedical data as nanopublications. - Pedro Sernadela; José Luís Oliveira (IET Softw., 2018)

Strategies to Access Patient Clinical Data from Distributed Databases. - João Rafael Almeida; Olga Fajarda; Arnaldo Pereira; José Luís Oliveira (HEALTHINF, 2019)

FAIRness in Biomedical Data Discovery. - Alina Trifan; José Luís Oliveira (HEALTHINF, 2019)

Towards a More Reproducible Biomedical Research Environment: Endorsement and Adoption of the FAIR Principles. - Alina Trifan; José Luís Oliveira (BIOSTEC (Selected Papers), 2019)

GenericCDSS - A Generic Clinical Decision Support System. - João Rafael Duarte de Almeida; José Luís Oliveira (CBMS, 2019)

A Weighted Rule-Based Model for File Forgery Detection: UA.PT Bioinformatics at ImageCLEF 2019. - João Rafael Almeida; Pedro Freire; Olga Fajarda; José Luís Oliveira (CLEF (Working Notes), 2019)

UA.PT Bioinformatics at ImageCLEF 2019: Lifelog Moment Retrieval based on Image Annotation and Natural Language Processing. - Ricardo F. Ribeiro; António J. R. Neves; José Luís Oliveira (CLEF (Working Notes), 2019)

BioInfo@UAVR at eRisk 2019: delving into Social Media Texts for the Early Detection of Mental and Food Disorders. - Alina Trifan; José Luís Oliveira (CLEF (Working Notes), 2019)

Image selection based on low level properties for lifelog moment retrieval. - Ricardo F. Ribeiro; António J. R. Neves; José Luís Oliveira (ICMV, 2019)

EMIF Catalogue: A collaborative platform for sharing and reusing biomedical data. - José Luís Oliveira; Alina Trifan; Luís A. Bastião Silva (Int. J. Medical Informatics, 2019)

Patient data discovery platforms as enablers of biomedical and translational research: A systematic review. - Alina Trifan; José Luís Oliveira (J. Biomed. Informatics, 2019)

TASKA: A modular task management system to support health research studies. - João Rafael Almeida; Rosa Gini; Giuseppe Roberto; Peter R. Rijnbeek; José Luís Oliveira (BMC Medical Informatics Decis. Mak., 2019)

Exploring a Siamese Neural Network Architecture for One-Shot Drug Discovery. - Luis H. M. Torres; Nelson R. C. Monteiro; José Luís Oliveira; Joel Arrais; Bernardete Ribeiro (BIBE, 2020)

A Computational Platform for Heart Failure Cases Research. - João Rafael Almeida; Pedro Freire; Olga Fajarda; José Luís Oliveira (HEALTHINF, 2020)

Enhancing Decision-making Systems with Relevant Patient Information by Leveraging Clinical Notes. - João Rafael Almeida; João Figueira Silva; Alejandro Pazos Sierra; Sérgio Matos; José Luís Oliveira (HEALTHINF, 2020)

Leveraging Clinical Notes for Enhancing Decision-Making Systems with Relevant Patient Information. - João Rafael Almeida; João Figueira Silva; Alejandro Pazos Sierra; Sérgio Matos; José Luís Oliveira (BIOSTEC (Selected Papers), 2020)

A Recommender System to Help Discovering Cohorts in Rare Diseases. - João Rafael Almeida; Eriksson J. Melicio Monteiro; Luís A. Bastião Silva; Alejandro Pazos Sierra; José Luís Oliveira (CBMS, 2020)

Multi-language Concept Normalisation of Clinical Cohorts. - João Rafael Almeida; José Luís Oliveira (CBMS, 2020)

File Forgery Detection Using a Weighted Rule-Based System. - João Rafael Almeida; Olga Fajarda; José Luís Oliveira (CLEF, 2020)

UA.PT Bioinformatics at ImageCLEF 2020: Lifelog Moment Retrieval Web based Tool. - Ricardo F. Ribeiro; Júlio Silva; Alina Trifan; José Luís Oliveira; António J. R. Neves (CLEF (Working Notes), 2020)

BioInfo@UAVR at eRisk 2020: on the Use of Psycholinguistics Features and Machine Learning for the Classification and Quantification of Mental Diseases. - Alina Trifan; Pedro Salgado; José Luís Oliveira (CLEF (Working Notes), 2020)

Understanding Depression from Psycholinguistic Patterns in Social Media Texts. - Alina Trifan; Rui Antunes 002; Sérgio Matos; José Luís Oliveira (ECIR (2), 2020)

A Recommender System Based on Cohorts' Similarity. - João Rafael Almeida; Eriksson J. Melicio Monteiro; Luís A. Bastião Silva; Alejandro Pazos; José Luís Oliveira (MIE, 2020)

Social Media Mining for Postpartum Depression Prediction. - Alina Trifan; Dave Semeraro; Justin A. Drake; Radek Bukowski; José Luís Oliveira (MIE, 2020)

Machine Learning for Depression Screening in Online Communities. - Alina Trifan; Rui Antunes 002; José Luís Oliveira (PACBB, 2020)

Merging microarray studies to identify a common gene expression signature to several structural heart diseases. - Olga Fajarda; Sara Duarte-Pereira; Raquel M. Silva; José Luís Oliveira (BioData Min., 2020)

GTO: A toolkit to unify pipelines in genomic and proteomic research. - João Rafael Almeida; Armando J. Pinho; José Luís Oliveira; Olga Fajarda; Diogo Pratas (SoftwareX, 2020)

Bilingual Emotion Analysis on Social Media throughout the COVID19 Pandemic in Portugal. - Alina Trifan; Sérgio Matos; Pedro Morgado 002; José Luís Oliveira (HEALTHINF, 2021)

An Architecture to Define Cohorts over Medical Imaging Datasets. - João Rafael Almeida; Eriksson J. Melicio Monteiro; José Luís Oliveira (CBMS, 2021)

Improvements in lymphocytes detection using deep learning with a preprocessing stage. - Rodrigo Escobar Díaz Guerrero; José Luís Oliveira (CBMS, 2021)

Easing the Questioning of Semantic Biomedical Data. - Arnaldo Pereira; Rui Pedro Lopes; José Luís Oliveira (CBMS, 2021)

A Comparative Analysis of Data Platforms for Rare Diseases. - Mariana Sequeira; João Rafael Almeida; José Luís Oliveira (CBMS, 2021)

VADER meets BERT: sentiment analysis for early detection of signs of self-harm through social mining. - Lucas Barros; Alina Trifan; José Luís Oliveira (CLEF (Working Notes), 2021)

A Recommender System to Help Refining Clinical Research Studies. - João Rafael Almeida; João Figueira Silva; Sérgio Matos; Alejandro Pazos; José Luís Oliveira (MIE, 2021)

Optimizing blood-brain barrier permeation through deep reinforcement learning for de novo drug design. - Tiago Pereira 001; Maryam Abbasi; José Luís Oliveira; Bernardete Ribeiro; Joel Arrais (Bioinform., 2021)

A semi-automatic methodology for analysing distributed and private biobanks. - João Rafael Almeida; Diogo Pratas; José Luís Oliveira (Comput. Biol. Medicine, 2021)

A two-stage workflow to extract and harmonize drug mentions from clinical notes into observational databases. - João Rafael Almeida; João Figueira Silva; Sérgio Matos; José Luís Oliveira (J. Biomed. Informatics, 2021)

Cross-evaluation of social mining for classification of depressed online personas. - Alina Trifan; José Luís Oliveira (J. Integr. Bioinform., 2021)

BIcenter: A collaborative Web ETL solution based on a reflective software approach. - João Rafael Almeida; Leonardo Coelho; José Luís Oliveira (SoftwareX, 2021)

Automatic Classification of Stigmatizing Articles of Mental Illness: The Case of Portuguese Online Newspapers. - Alina Yanchuk; Alina Trifan; Olga Fajarda; José Luís Oliveira (ADBIS (Short Papers), 2022)

Portuguese Twitter Dataset on COVID-19. - Richard Adolph Aires Jonker; Roshan Poudel; Olga Fajarda; Sérgio Matos; José Luís Oliveira; Rui Pedro Lopes (ASONAM, 2022)

A secure architecture for exploring patient-level databases from distributed institutions. - João Rafael Almeida; João Paulo Barraca; José Luís Oliveira (CBMS, 2022)

Combining heterogeneous patient-level data into tranSMART to support multicentre studies. - João Rafael Almeida; Luís Bastião Silva; Alejandro Pazos; José Luís Oliveira (CBMS, 2022)

Visualising Time-evolving Semantic Biomedical Data. - Arnaldo Pereira; João Rafael Almeida; Rui Pedro Lopes; José Luís Oliveira (CBMS, 2022)

Classifying and discovering genomic sequences in metagenomic repositories. - Jorge Miguel Silva; João Rafael Almeida; José Luís Oliveira (CENTERIS/ProjMAN/HCist, 2022)

Early risk detection of mental illnesses using various types of textual features. - Rodrigo Ferreira; Alina Trifan; José Luís Oliveira (CLEF (Working Notes), 2022)

BioInfo@UAVR@SMM4H'22: Classification and Extraction of Adverse Event mentions in Tweets using Transformer Models. - Edgar Morais; José Luís Oliveira; Alina Trifan; Olga Fajarda (SMM4H@COLING, 2022)

Preserving Privacy when Querying OMOP CDM Databases. - João Rafael Almeida; João Paulo Barraca; José Luís Oliveira (EFMI-STC, 2022)

Discovery of Biomedical Databases Through Semantic Questioning. - Arnaldo Pereira; João Rafael Almeida; Rui Pedro Lopes; Alejandro Pazos; José Luís Oliveira (MIE, 2022)

The NAD Interactome, Identification of Putative New NAD-Binding Proteins. - Sara Duarte-Pereira; Sérgio Matos; José Luís Oliveira; Raquel M. Silva (PACBB, 2022)

Explainable deep drug-target representations for binding affinity prediction. - Nelson R. C. Monteiro; Carlos J. V. Simões; Henrique V. Ávila; Maryam Abbasi; José Luís Oliveira; Joel P. Arrais (BMC Bioinform., 2022)

DTITR: End-to-end drug-target binding affinity prediction with transformers. - Nelson R. C. Monteiro; José Luís Oliveira; Joel P. Arrais (Comput. Biol. Medicine, 2022)

Systematic review of question answering over knowledge bases. - Arnaldo Pereira; Alina Trifan; Rui Pedro Lopes; José Luís Oliveira (IET Softw., 2022)

Designing optimized drug candidates with Generative Adversarial Network. - Maryam Abbasi; Beatriz P. Santos; Tiago C. Pereira; Raul Sofia; Nelson R. C. Monteiro; Carlos J. V. Simões; Rui M. M. Brito; Bernardete Ribeiro; José Luís Oliveira; Joel P. Arrais (J. Cheminformatics, 2022)

Correction to: Designing optimized drug candidates with Generative Adversarial Network. - Maryam Abbasi; Beatriz P. Santos; Tiago C. Pereira; Raul Sofa; Nelson R. C. Monteiro; Carlos J. V. Simões; Rui M. M. Brito; Bernardete Ribeiro; José Luís Oliveira; Joel P. Arrais (J. Cheminformatics, 2022)

A FAIR Approach to Real-World Health Data Management and Analysis. - João Rafael Almeida; Jorge Miguel Silva; José Luís Oliveira (CBMS, 2023)

SecureFASTA: Ensuring privacy and trust when sharing genomic data. - Diniz Cruz; João Rafael Almeida; Jorge Miguel Silva; José Luís Oliveira (CBMS, 2023)

A Multimodal Image Registration System for Histology Images. - Rodrigo Escobar Díaz Guerrero; Yubraj Gupta; Thomas Bocklitz; José Luís Oliveira (CBMS, 2023)

Clinical Data Integration Strategies for Multicenter Studies. - João Rafael Almeida; Alejandro Pazos; José Luís Oliveira (DoCEIS, 2023)

DyPrune: Dynamic Pruning Rates for Neural Networks. - Richard Adolph Aires Jonker; Roshan Poudel; Olga Fajarda; José Luís Oliveira; Rui Pedro Lopes; Sérgio Matos (EPIA (1), 2023)

A 20-Year Journey of Tracing the Development of Web Catalogues for Rare Diseases. - João Rafael Almeida; José Luís Oliveira (IWBBIO (2), 2023)

Optimizing Variant Calling for Human Genome Analysis: A Comprehensive Pipeline Approach. - Miguel Pinheiro; Jorge Miguel Silva; José Luís Oliveira (IWBBIO (2), 2023)

A Reliable and Secure Method for Sharing Genomic Data. - Dinis Barroqueiro Cruz; João Rafael Almeida; Jorge M. Silva; José Luís Oliveira (MIE, 2023)

Open Source Solutions for Vulnerability Assessment: A Comparative Analysis. - Dinis Barroqueiro Cruz; João Rafael Almeida; José Luís Oliveira (IEEE Access, 2023)

Querying semantic catalogues of biomedical databases. - Arnaldo Pereira; João Rafael Almeida; Rui Pedro Lopes; José Luís Oliveira (J. Biomed. Informatics, 2023)

Methodology to identify a gene expression signature by merging microarray datasets. - Olga Fajarda; João Rafael Almeida; Sara Duarte-Pereira; Raquel M. Silva; José Luís Oliveira (Comput. Biol. Medicine, 2023)

Study of NAD-interacting proteins highlights the extent of NAD regulatory roles in the cell and its potential as a therapeutic target. - Sara Duarte-Pereira; Sérgio Matos; José Luís Oliveira; Raquel M. Silva (J. Integr. Bioinform., 2023)

FSM-DDTR: End-to-end feedback strategy for multi-objective De Novo drug design using transformers. - Nelson R. C. Monteiro; Tiago Pereira 001; Ana Catarina D. Machado; José Luís Oliveira; Maryam Abbasi; Joel P. Arrais (Comput. Biol. Medicine, 2023)

Assessing the feasibility of observational data sources for multicenter clinical studies. - João Rafael Almeida; Peter R. Rijnbeek; Maxim Moinat; José Luís Oliveira (CBMS, 2024)

HealthDBFinder: a question-answering task for health database discovery. - João Rafael Almeida; Jorge Miguel Silva; Luís Carlos Afonso; Tiago Melo Almeida; Rui Antunes 002; Richard A. A. Jonker; João António Reis; Dimitri Alexandre da Silva; Sérgio Matos; José Luís Oliveira (CBMS, 2024)

BIT.UA at iDPP: Predictive Analytics on ALS Disease Progression Using Sensor Data with Machine Learning. - Jorge Miguel Silva; José Luís Oliveira (CLEF (Working Notes), 2024)

TAG-DTA: Binding-region-guided strategy to predict drug-target affinity using transformers. - Nelson R. C. Monteiro; José Luís Oliveira; Joel P. Arrais (Expert Syst. Appl., 2024)

MMIR: an open-source software for the registration of multimodal histological images. - Rodrigo Escobar Díaz Guerrero; José Luís Oliveira; Jürgen Popp; Thomas Bocklitz (BMC Medical Informatics Decis. Mak., 2024)

A Comparative Analysis of Ai-Based Solutions for Clinical Documentation. - Luís Carlos Afonso; João Rafael Almeida; José Luís Oliveira (CBMS, 2025)

An Embedding-Based Method for Processing Medical Audio into Structured Reports. - Luís Carlos Afonso; Carolina Gonçalves; Catarina Sousa; José Luís Oliveira (CBMS, 2025)

An Embedding-Based Machine Learning Solution for Medical Concept Mapping. - Vicente Barros; Raquel Paradinha; João Rafael Almeida; José Luís Oliveira (CBMS, 2025)

A Federated Random Forest Solution for Secure Distributed Machine Learning. - Alexandre Cotorobai; Jorge Miguel Silva; José Luís Oliveira (CBMS, 2025)