BEAM: A Computational Workflow System for Managing and Modeling Material Characterization Data in HPC Environments. - Eric J. Lingerfelt; Alex Belianinov; Eirik Endeve; O. Ovchinnikov; Suhas Somnath; Jose M. Borreguero; N. Grodowitz; B. Park; Richard K. Archibald; Christopher T. Symons; Sergei V. Kalinin; O. E. Bronson Messer; et al. (ICCS, 2016)

An automated analysis workflow for optimization of force-field parameters using neutron scattering data. - Vickie E. Lynch; Jose M. Borreguero; Debsindhu Bhowmik; Panchapakesan Ganesh; Bobby G. Sumpter; Thomas Proffen; Monojoy Goswami (J. Comput. Phys., 2017)

idpflex: Analysis of Intrinsically Disordered Proteins by Comparing Simulations to Small Angle Scattering Experiments. - Jose M. Borreguero; Fahima Islam; Utsab R. Shrestha; Loukas Petridis (J. Open Source Softw., 2018)