TSEMA: interactive prediction of protein pairings between interacting families. - José M. G. Izarzugaza; David de Juan; Carles Pons; Juan A. G. Ranea; Alfonso Valencia; Florencio Pazos (Nucleic Acids Res., 2006)

Enhancing the prediction of protein pairings between interacting families using orthology information. - José M. G. Izarzugaza; David de Juan; Carles Pons; Florencio Pazos; Alfonso Valencia (BMC Bioinform., 2008)

An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3D. - José M. G. Izarzugaza; Anja Baresic; Lisa E. M. McMillan; Corin Yeats; Andrew B. Clegg; Christine A. Orengo; Andrew C. R. Martin; Alfonso Valencia (BMC Bioinform., 2009)

Extraction of human kinase mutations from literature, databases and genotyping studies. - Martin Krallinger; José M. G. Izarzugaza; Carlos Rodríguez Penagos; Alfonso Valencia (BMC Bioinform., 2009)

Characterization of pathogenic germline mutations in human Protein Kinases. - José M. G. Izarzugaza; Lisa E. M. Hopcroft; Anja Baresic; Christine A. Orengo; Andrew C. R. Martin; Alfonso Valencia (BMC Bioinform., 2011)

wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases. - José M. G. Izarzugaza; Miguel Vazquez; Angela del Pozo; Alfonso Valencia (BMC Bioinform., 2013)

Sequencing and de novo assembly of 150 genomes from Denmark as a population reference. - Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; Jette Bork-Jensen; et al. (Nat., 2017)

Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios. - Maria Luisa Matey-Hernandez; Lasse Maretty; Jacob Malte Jensen; Bent Petersen; Jonas Andreas Sibbesen; Siyang Liu 007; Palle Villesen; Laurits Skov; Kirstine Belling; Christian Theil Have; José M. G. Izarzugaza; Marie Grosjean; et al. (BMC Bioinform., 2018)

A generic deep convolutional neural network framework for prediction of receptor-ligand interactions - NetPhosPan: application to kinase phosphorylation prediction. - Emilio Fenoy; José M. G. Izarzugaza; Vanessa Isabell Jurtz; Søren Brunak; Morten Nielsen 001 (Bioinform., 2019)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)