Boosting Backward Search Throughput for FM-Index Using a Compressed Encoding. - Jose Manuel Herruzo; Sonia González-Navarro; Pablo Ibáñez 001; Víctor Viñals; Jesús Alastruey-Benedé; Oscar G. Plata (DCC, 2019)

Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor. - Jose Manuel Herruzo; Sonia González-Navarro; Pablo Ibáñez-Marín; Víctor Viñals Yúfera; Jesús Alastruey-Benedé; Oscar G. Plata (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Genome Sequence Alignment - Design Space Exploration for Optimal Performance and Energy Architectures. - Yasir Mahmood Qureshi; Jose Manuel Herruzo; Marina Zapater; Katzalin Olcoz; Sonia Gonzalez-Navarro; Oscar G. Plata; David Atienza (IEEE Trans. Computers, 2021)

Enabling fast and energy-efficient FM-index exact matching using processing-near-memory. - Jose Manuel Herruzo; Ivan Fernandez; Sonia González-Navarro; Oscar G. Plata (J. Supercomput., 2021)