A general deep hybrid model for bioreactor systems: Combining first principles with deep neural networks. - José Pinto 007; Mykaella Mestre; J. Ramos; Rafael S. Costa; Gerald Striedner; Rui Oliveira 002 (Comput. Chem. Eng., 2022)

SBML2HYB: a Python interface for SBML compatible hybrid modeling. - José Pinto 007; Rafael S. Costa; Leonardo Alexandre; João Ramos; Rui Oliveira 002 (Bioinform., 2023)

Hybrid Deep Modeling of Biotechnological Processes: Combining Deep Neural Networks with First Principles Knowledge - José Pinto 007 (2024)

Incorporating first-principles information into hybrid modeling structures: Comparing hybrid semi-parametric models with Physics-Informed Recurrent Neural Networks. - Peter Jul-Rasmussen; Monesh Kumar; José Pinto 007; Rui Oliveira 002; Xiaodong Li; Jakob Kjøbsted Huusom (Comput. Chem. Eng., 2025)