A nonparametric MRI inhomogeneity correction method. - José V. Manjón; Juan José Lull; José Carbonell-Caballero; Gracián García-Martí; Luis Martí-Bonmatí; Montserrat Robles (Medical Image Anal., 2007)

MRI denoising using Non-Local Means. - José V. Manjón; José Carbonell-Caballero; Juan José Lull; Gracián García-Martí; Luis Martí-Bonmatí; Montserrat Robles (Medical Image Anal., 2008)

An Object-Based Method for Rician Noise Estimation in MR Images. - Pierrick Coupé; José V. Manjón; Elias Gedamu; Douglas L. Arnold; Montserrat Robles; D. Louis Collins (MICCAI (1), 2009)

Multicomponent MR Image Denoising. - José V. Manjón; Neil A. Thacker; Juan José Lull; Gracián García-Martí; Luis Martí-Bonmatí; Montserrat Robles (Int. J. Biomed. Imaging, 2009)

Nonlocal Patch-Based Label Fusion for Hippocampus Segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (MICCAI (3), 2010)

MRI Superresolution Using Self-Similarity and Image Priors. - José V. Manjón; Pierrick Coupé; Antonio Buades; D. Louis Collins; Montserrat Robles (Int. J. Biomed. Imaging, 2010)

Robust Rician noise estimation for MR images. - Pierrick Coupé; José V. Manjón; Elias Gedamu; Douglas L. Arnold; Montserrat Robles; D. Louis Collins (Medical Image Anal., 2010)

Non-local MRI upsampling. - José V. Manjón; Pierrick Coupé; Antonio Buades; Vladimir S. Fonov; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2010)

Improved estimates of partial volume coefficients from noisy brain MRI using spatial context. - José V. Manjón; Jussi Tohka; Montserrat Robles (NeuroImage, 2010)

Simultaneous Segmentation and Grading of Hippocampus for Patient Classification with Alzheimer's Disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (MICCAI (3), 2011)

Patch-based segmentation using expert priors: Application to hippocampus and ventricle segmentation. - Pierrick Coupé; José V. Manjón; Vladimir S. Fonov; Jens C. Pruessner; Montserrat Robles; D. Louis Collins (NeuroImage, 2011)

A CANDLE for a deeper in vivo insight. - Pierrick Coupé; Martin Munz; José V. Manjón; Edward S. Ruthazer; D. Louis Collins (Medical Image Anal., 2012)

New methods for MRI denoising based on sparseness and self-similarity. - José V. Manjón; Pierrick Coupé; Antonio Buades; D. Louis Collins; Montserrat Robles (Medical Image Anal., 2012)

Simultaneous segmentation and grading of anatomical structures for patient's classification: Application to Alzheimer's disease. - Pierrick Coupé; Simon F. Eskildsen; José V. Manjón; Vladimir S. Fonov; D. Louis Collins (NeuroImage, 2012)

BEaST: Brain extraction based on nonlocal segmentation technique. - Simon F. Eskildsen; Pierrick Coupé; Vladimir S. Fonov; José V. Manjón; Kelvin K. Leung; Nicolas Guizard; Shafik N. Wassef; Lasse Riis Østergaard; D. Louis Collins (NeuroImage, 2012)

Collaborative patch-based super-resolution for diffusion-weighted images. - Pierrick Coupé; José V. Manjón; Maxime Chamberland; Maxime Descoteaux; Bassem Hiba (NeuroImage, 2013)

Nonlocal Intracranial Cavity Extraction. - José V. Manjón; Simon F. Eskildsen; Pierrick Coupé; José E. Romero; D. Louis Collins; Montserrat Robles (Int. J. Biomed. Imaging, 2014)

Patch-Based Segmentation from MP2RAGE Images: Comparison to Conventional Techniques. - Erhard T. Næss-Schmidt; Anna Tietze; Irene K. Mikkelsen; Mikkel V. Petersen; Jakob Udby Blicher; Pierrick Coupé; José V. Manjón; Simon F. Eskildsen (Patch-MI@MICCAI, 2015)

MRI noise estimation and denoising using non-local PCA. - José V. Manjón; Pierrick Coupé; Antonio Buades (Medical Image Anal., 2015)

Patch-Based DTI Grading: Application to Alzheimer's Disease Classification. - Kilian Hett; Vinh-Thong Ta 002; Rémi Giraud; Mary Mondino; José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2016)

HIST: HyperIntensity Segmentation Tool. - José V. Manjón; Pierrick Coupé; Parnesh Raniga; Ying Xia; Jurgen Fripp; Olivier Salvado (Patch-MI@MICCAI, 2016)

Non-local MRI Library-Based Super-Resolution: Application to Hippocampus Subfield Segmentation. - José E. Romero; Pierrick Coupé; José V. Manjón (Patch-MI@MICCAI, 2016)

High Resolution Hippocampus Subfield Segmentation Using Multispectral Multiatlas Patch-Based Label Fusion. - José E. Romero; Pierrick Coupé; José V. Manjón (Patch-MI@MICCAI, 2016)

Accounting for the Confound of Meninges in Segmenting Entorhinal and Perirhinal Cortices in T1-Weighted MRI. - Long Xie; Laura E. M. Wisse; Sandhitsu R. Das; Hongzhi Wang 002; David A. Wolk; José V. Manjón; Paul A. Yushkevich (MICCAI (2), 2016)

Automatic thalamus and hippocampus segmentation from MP2RAGE: comparison of publicly available methods and implications for DTI quantification. - Erhard T. Næss-Schmidt; Anna Tietze; Jakob Udby Blicher; Mikkel V. Petersen; Irene K. Mikkelsen; Pierrick Coupé; José V. Manjón; Simon F. Eskildsen (Int. J. Comput. Assist. Radiol. Surg., 2016)

volBrain: An Online MRI Brain Volumetry System. - José V. Manjón; Pierrick Coupé (Frontiers Neuroinformatics, 2016)

An Optimized PatchMatch for multi-scale and multi-feature label fusion. - Rémi Giraud; Vinh-Thong Ta 002; Nicolas Papadakis; José V. Manjón; D. Louis Collins; Pierrick Coupé (NeuroImage, 2016)

Automated cartilage segmentation from 3D MR images of hip joint using an ensemble of neural networks. - Ying Xia; José V. Manjón; Craig Engstrom; Stuart Crozier; Olivier Salvado; Jurgen Fripp (ISBI, 2017)

Adaptive Fusion of Texture-Based Grading: Application to Alzheimer's Disease Detection. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2017)

Hippocampus Subfield Segmentation Using a Patch-Based Boosted Ensemble of Autocontext Neural Networks. - José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2017)

Early Prediction of Alzheimer's Disease with Non-local Patch-Based Longitudinal Descriptors. - Gerard Sanroma; Víctor Andrea; Oualid M. Benkarim; José V. Manjón; Pierrick Coupé; Oscar Camara 001; Gemma Piella; Miguel Ángel González Ballester (Patch-MI@MICCAI, 2017)

CERES: A new cerebellum lobule segmentation method. - José E. Romero; Pierrick Coupé; Rémi Giraud; Vinh-Thong Ta 002; Vladimir S. Fonov; Min Tae M. Park; M. Mallar Chakravarty; Aristotle N. Voineskos; José V. Manjón (NeuroImage, 2017)

HIPS: A new hippocampus subfield segmentation method. - José E. Romero; Pierrick Coupé; José V. Manjón (NeuroImage, 2017)

Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability. - Long Xie; John Pluta; Sandhitsu R. Das; Laura E. M. Wisse; Hongzhi Wang 002; Lauren Mancuso; Dasha Kliot; Brian B. Avants; Song-Lin Ding; José V. Manjón; David A. Wolk; Paul A. Yushkevich (NeuroImage, 2017)

LesionBrain: An Online Tool for White Matter Lesion Segmentation. - Pierrick Coupé; Thomas Tourdias; Pierre Linck; José E. Romero; José V. Manjón (Patch-MI@MICCAI, 2018)

Graph of Brain Structures Grading for Early Detection of Alzheimer's Disease. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (MICCAI (3), 2018)

Graph of Hippocampal Subfields Grading for Alzheimer's Disease Prediction. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (MLMI@MICCAI, 2018)

MRI Denoising Using Deep Learning. - José V. Manjón; Pierrick Coupé (Patch-MI@MICCAI, 2018)

MRI Denoising and Artefact Removal Using Self-Organizing Maps for Fast Global Block-Matching. - Lee B. Reid; Ashley Gillman; Alex M. Pagnozzi; José V. Manjón; Jurgen Fripp (Patch-MI@MICCAI, 2018)

Adaptive fusion of texture-based grading for Alzheimer's disease classification. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé; Alzheimer's Disease Neuroimaging Initiative (Comput. Medical Imaging Graph., 2018)

MRI white matter lesion segmentation using an ensemble of neural networks and overcomplete patch-based voting. - José V. Manjón; Pierrick Coupé; Parnesh Raniga; Ying Xia; Patricia M. Desmond; Jurgen Fripp; Olivier Salvado (Comput. Medical Imaging Graph., 2018)

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images. - Aaron Carass; Jennifer L. Cuzzocreo; Shuo Han 001; Carlos R. Hernandez-Castillo; Paul E. Rasser; Melanie Ganz; Vincent Beliveau; Jose Dolz; Ismail Ben Ayed; Christian Desrosiers; Benjamin Thyreau; José E. Romero; et al. (NeuroImage, 2018)

Corrigendum to "HIPS: A new hippocampus subfield segmentation method" [NeuroImage 163 (2017) 286-295]. - José E. Romero; Pierrick Coupé; José V. Manjón (NeuroImage, 2018)

AssemblyNet: A Novel Deep Decision-Making Process for Whole Brain MRI Segmentation. - Pierrick Coupé; Boris Mansencal; Michaël Clément; Rémi Giraud; Baudouin Denis de Senneville; Vinh-Thong Ta 002; Vincent Lepetit; José V. Manjón (MICCAI (3), 2019)

An Optimized PatchMatch for Multi-scale and Multi-feature Label Fusion. - Rémi Giraud; Vinh-Thong Ta 002; Nicolas Papadakis; José V. Manjón; D. Louis Collins; Pierrick Coupé; Alzheimer's Disease Neuroimaging Initiative (CoRR, 2019)

Multi-scale Graph-based Grading for Alzheimer's Disease Prediction. - Kilian Hett; Vinh-Thong Ta 002; José V. Manjón; Pierrick Coupé (CoRR, 2019)

MRI denoising using Deep Learning and Non-local averaging. - José V. Manjón; Pierrick Coupé (CoRR, 2019)

Blind MRI Brain Lesion Inpainting Using Deep Learning. - José V. Manjón; José E. Romero; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Thomas Tourdias; Pierrick Coupé (SASHIMI@MICCAI, 2020)

RegQCNET: Deep Quality Control for Image-to-template Brain MRI Registration. - Baudouin Denis de Senneville; José V. Manjón; Pierrick Coupé (CoRR, 2020)

Towards broader generalization of deep learning methods for multiple sclerosis lesion segmentation. - Reda Abdellah Kamraoui; Vinh-Thong Ta 002; Thomas Tourdias; Boris Mansencal; José V. Manjón; Pierrick Coupé (CoRR, 2020)

AssemblyNet: A large ensemble of CNNs for 3D whole brain MRI segmentation. - Pierrick Coupé; Boris Mansencal; Michaël Clément; Rémi Giraud; Baudouin Denis de Senneville; Vinh-Thong Ta 002; Vincent Lepetit; José V. Manjón (NeuroImage, 2020)

POPCORN: Progressive Pseudo-Labeling with Consistency Regularization and Neighboring. - Reda Abdellah Kamraoui; Vinh-Thong Ta 002; Nicolas Papadakis; Fanny Compaire; José V. Manjón; Pierrick Coupé (MICCAI (2), 2021)

Multi-scale graph-based grading for Alzheimer's disease prediction. - Kilian Hett; Vinh-Thong Ta 002; Ipek Oguz; José V. Manjón; Pierrick Coupé (Medical Image Anal., 2021)

Longitudinal detection of new MS lesions using Deep Learning. - Reda Abdellah Kamraoui; Boris Mansencal; José V. Manjón; Pierrick Coupé (CoRR, 2022)

vol2Brain: A New Online Pipeline for Whole Brain MRI Analysis. - José V. Manjón; José E. Romero; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Pierrick Coupé (Frontiers Neuroinformatics, 2022)

DeepLesionBrain: Towards a broader deep-learning generalization for multiple sclerosis lesion segmentation. - Reda Abdellah Kamraoui; Vinh-Thong Ta 002; Thomas Tourdias; Boris Mansencal; José V. Manjón; Pierrick Coupé (Medical Image Anal., 2022)

Unsupervised Deep Learning Method for Bias Correction. - Maria Perez-Caballero; Sergio Morell-Ortega; Marina Ruiz-Perez; Pierrick Coupé; José V. Manjón (MIDL, 2024)

MRI Rician Noise Reduction Using Recurrent Convolutional Neural Networks. - Javier Gurrola-Ramos; Teresa E. Alarcón; Oscar S. Dalmau; José V. Manjón (IEEE Access, 2024)

DeepThalamus: A novel deep learning method for automatic segmentation of brain thalamic nuclei from multimodal ultra-high resolution MRI. - Marina Ruiz-Perez; Sergio Morell-Ortega; Marien Gadea; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Thomas Tourdias; Pierrick Coupé; José V. Manjón (CoRR, 2024)

DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. - Sergio Morell-Ortega; Marina Ruiz-Perez; Marien Gadea; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Gwenaelle Catheline; Pierrick Coupé; José V. Manjón (CoRR, 2024)

DeepCERES: A deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRI. - Sergio Morell-Ortega; Marina Ruiz-Perez; Marien Gadea; Roberto Vivó Hernando; Gregorio Rubio; Fernando Aparici-Robles; María de la Iglesia-Vayá; Gwenaelle Catheline; Boris Mansencal; Pierrick Coupé; José V. Manjón (NeuroImage, 2025)

Ultra-high resolution multimodal MRI dense labelled holistic brain atlas. - José V. Manjón; Sergio Morell-Ortega; Marina Ruiz-Perez; Boris Mansencal; Edern Le Bot; Marien Gadea; Enrique Lanuza; Gwenaelle Catheline; Thomas Tourdias; Vincent Planche; Rémi Giraud; Denis Rivière; et al. (CoRR, 2025)

Lifespan tree of brain anatomy: diagnostic values for motor and cognitive neurodegenerative diseases. - Pierrick Coupé; Boris Mansencal; José V. Manjón; Patrice Péran; Wassilios G. Meissner; Thomas Tourdias; Vincent Planche (CoRR, 2025)

FLAIRBrainSeg: Fine-grained brain segmentation using FLAIR MRI only. - Edern Le Bot; Rémi Giraud; Boris Mansencal; Thomas Tourdias; José V. Manjón; Pierrick Coupé (CoRR, 2025)

petBrain: A New Pipeline for Amyloid, Tau Tangles and Neurodegeneration Quantification Using PET and MRI. - Pierrick Coupé; Boris Mansencal; Floréal Morandat; Sergio Morell-Ortega; Nicolas Villain; José V. Manjón; Vincent Planche (CoRR, 2025)