Object-oriented developmental environment for image-analysis applications: implementation for 2D gel electrophoretogram analysis. - Josef Pánek; Jirí Vohradský (Comput. Appl. Biosci., 1997)

Template-based prediction of ribosomal RNA secondary structure. - Josef Pánek; Jan Hajic jr.; David Hoksza (BIBM, 2014)

Template-based prediction of RNA tertiary structure. - Rastislav Galvanek; David Hoksza; Josef Pánek (BIBM, 2016)

rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots. - Jan Jelínek; David Hoksza; Jan Hajic 002; Jan Pesek; Jan Drozen; Tomás Hladík; Michal Klimpera; Jirí Vohradský; Josef Pánek (Database J. Biol. Databases Curation, 2019)

cpPredictor: a web server for template-based prediction of RNA secondary structure. - Jan Jelínek; Josef Pánek (Bioinform., 2019)

rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output. - Marek Schwarz; Jirí Vohradský; Josef Pánek (Bioinform., 2021)