gff2ps: visualizing genomic annotations. - Josep F. Abril; Roderic Guigó (Bioinform., 2000)

gff2aplot: Plotting sequence comparisons. - Josep F. Abril; Roderic Guigó; Thomas Wiehe (Bioinform., 2003)

ECCB/JBI 2005. - Roderic Guigó; Federico Morán; Alfonso Valencia; Josep F. Abril (ECCB/JBI, 2005)

SiNoPsis: Single Nucleotide Polymorphisms selection and promoter profiling. - Daniel Boloc; Natalia Rodríguez; Patricia Gassó; Josep F. Abril; Miquel Bernardo; Amalia Lafuente; Sergi Mas (Bioinform., 2018)

PlanNET: homology-based predicted interactome for multiple planarian transcriptomes. - Sergio Castillo-Lara; Josep F. Abril (Bioinform., 2018)

RPGeNet v2.0: expanding the universe of retinal disease gene interactions network. - Rodrigo Arenas-Galnares; Sergio Castillo-Lara; Vasileios Toulis; Daniel Boloc; Roser Gonzàlez-Duarte; Gemma Marfany; Josep F. Abril (Database J. Biol. Databases Curation, 2019)

PPaxe: easy extraction of protein occurrence and interactions from the scientific literature. - Sergio Castillo-Lara; Josep F. Abril (Bioinform., 2019)

Genome Annotation. - Josep F. Abril; Sergi Castellano (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

PlanExp: intuitive integration of complex RNA-seq datasets with planarian omics resources. - Sergio Castillo-Lara; E. Pascual-Carreras; Josep F. Abril (Bioinform., 2020)