Dynamic cellular automata: a simple but powerful approach to cellular simulation. - David S. Wishart; Robert Yang; David Arndt; Peter Tang; Joseph A. Cruz (Silico Biol., 2004)

BASys: a web server for automated bacterial genome annotation. - Gary H. Van Domselaar; Paul Stothard; Savita Shrivastava; Joseph A. Cruz; Anchi Guo; Xiaoli Dong; Paul Lu; Duane Szafron; Russell Greiner; David S. Wishart (Nucleic Acids Res., 2005)

BacMap: an interactive picture atlas of annotated bacterial genomes. - Paul Stothard; Gary H. Van Domselaar; Savita Shrivastava; Anchi Guo; Brian O'Neill; Joseph A. Cruz; Michael Ellison; David S. Wishart (Nucleic Acids Res., 2005)

PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation. - Scott Montgomerie; Joseph A. Cruz; Savita Shrivastava; David Arndt; Mark V. Berjanskii; David S. Wishart (Nucleic Acids Res., 2008)

GeNMR: a web server for rapid NMR-based protein structure determination. - Mark V. Berjanskii; Peter Tang; Jack Liang; Joseph A. Cruz; Jianjun Zhou; You Zhou; Edward Bassett; Cam Macdonell; Paul Lu; Guohui Lin; David S. Wishart (Nucleic Acids Res., 2009)

HMDB: a knowledgebase for the human metabolome. - David S. Wishart; Craig Knox; Anchi Guo; Roman Eisner; Nelson Young; Bijaya Gautam; David D. Hau; Nick Psychogios; Edison Dong; Souhaila Bouatra; Rupasri Mandal; Igor Sinelnikov; et al. (Nucleic Acids Res., 2009)

Phenol-Explorer: an online comprehensive database on polyphenol contents in foods. - Vanessa Neveu; Jara Perez-Jimenez; Femke Vos; Vanessa Crespy; Lerman du Chaffaut; Louise Mennen; Craig Knox; Roman Eisner; Joseph A. Cruz; David S. Wishart; Augustin Scalbert (Database J. Biol. Databases Curation, 2010)

PROSESS: a protein structure evaluation suite and server. - Mark V. Berjanskii; Yongjie Liang; Jianjun Zhou; Peter Tang; Paul Stothard; You Zhou; Joseph A. Cruz; Cam Macdonell; Guohui Lin; Paul Lu; David S. Wishart (Nucleic Acids Res., 2010)

Phenol-Explorer 2.0: a major update of the Phenol-Explorer database integrating data on polyphenol metabolism and pharmacokinetics in humans and experimental animals. - Joseph A. Rothwell; Mireia Urpi-Sarda; Maria Boto-Ordoñez; Craig Knox; Rafael Llorach; Roman Eisner; Joseph A. Cruz; Vanessa Neveu; David S. Wishart; Claudine Manach; Cristina Andres-Lacueva; Augustin Scalbert (Database J. Biol. Databases Curation, 2012)

METAGENassist: a comprehensive web server for comparative metagenomics. - David Arndt; Jianguo Xia; Yifeng Liu 001; You Zhou; Anchi Guo; Joseph A. Cruz; Igor Sinelnikov; Karen Budwill; Camilla L. Nesbø; David S. Wishart (Nucleic Acids Res., 2012)

BacMap: an up-to-date electronic atlas of annotated bacterial genomes. - Joseph A. Cruz; Yifeng Liu 001; Yongjie Liang; You Zhou; Michael Wilson 002; Jonathan J. Dennis; Paul Stothard; Gary H. Van Domselaar; David S. Wishart (Nucleic Acids Res., 2012)