NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks. - Daniel G. Hurley; Joseph Cursons; Yi Kan Wang; David M. Budden; Cristin G. Print; Edmund J. Crampin (Bioinform., 2015)

Regulation of ERK-MAPK signaling in human epidermis. - Joseph Cursons; Jerry Gao 003; Daniel G. Hurley; Cristin G. Print; P. Rod Dunbar; Marc Jacobs; Edmund J. Crampin (BMC Syst. Biol., 2015)

Toward Community Standards and Software for Whole-Cell Modeling. - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes 001; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

Single sample scoring of molecular phenotypes. - Momeneh Foroutan; Dharmesh D. Bhuva; Ruqian Lyu; Kristy Horan; Joseph Cursons; Melissa J. Davis (BMC Bioinform., 2018)

SingscoreAMLMutations: An R/Bioconductor workflow package. - Dharmesh D. Bhuva; Joseph Cursons; Yi Xie; Momeneh Foroutan; Melissa J. Davis (Zenodo, 2019)

Modular assembly of dynamic models in systems biology. - Michael Pan; Peter J. Gawthrop; Joseph Cursons; Edmund J. Crampin (PLoS Comput. Biol., 2021)