MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods. - Michael Stevens; Jeffrey B. Cheng; Mingchao Xie; Joseph F. Costello; Ting Wang (RECOMB, 2013)

ALEA: a toolbox for allele-specific epigenomics analysis. - Hamid Younesy; Torsten Möller; Alireza Heravi Moussavi; Jeffrey B. Cheng; Joseph F. Costello; Matthew C. Lorincz; Mohammad M. Karimi; Steven J. M. Jones (Bioinform., 2014)

methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser. - Xin Zhou; Daofeng Li; Rebecca F. Lowdon; Joseph F. Costello; Ting Wang (Bioinform., 2014)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

Longitudinal molecular trajectories of diffuse glioma in adults. - Floris P. Barthel; Kevin C. Johnson; Frederick S. Varn; Anzhela D. Moskalik; Georgette Tanner; Emre Kocakavuk; Kevin J. Anderson; Olajide Abiola; Kenneth D. Aldape; Kristin D. Alfaro; Donat Alpar; Samirkumar B. Amin; et al. (Nat., 2019)