The Role of Conformational Entropy in the Determination of Structural-Kinetic Relationships for Helix-Coil Transitions. - Joseph F. Rudzinski; Tristan Bereau (Comput., 2018)

Recent Progress towards Chemically-Specific Coarse-Grained Simulation Models with Consistent Dynamical Properties. - Joseph F. Rudzinski (Comput., 2019)

Interpretable embeddings from molecular simulations using Gaussian mixture variational autoencoders. - Yasemin Bozkurt Varolgunes; Tristan Bereau; Joseph F. Rudzinski (Mach. Learn. Sci. Technol., 2020)

NOMAD: A distributed web-based platform for managing materials science research data. - Markus Scheidgen; Lauri Himanen; Alvin N. Ladines; David Sikter; Mohammad Nakhaee; Ádám Fekete; Theodore Chang; Amir Golparvar; José A. Márquez; Sandor Brockhauser; Sebastian Brückner; Luca M. Ghiringhelli; et al. (J. Open Source Softw., 2023)

Martignac: Computational Workflows for Reproducible, Traceable, and Composable Coarse-Grained Martini Simulations. - Tristan Bereau; Luis J. Walter; Joseph F. Rudzinski (J. Chem. Inf. Model., 2024)