WebBLAST 2.0: an integrated solution for organizing and analyzing sequence data. - Prakash S. Ferlanti; Joseph F. Ryan 003; Izabela Makalowska; Andreas D. Baxevanis (Bioinform., 1999)

The Homeodomain Resource: sequences, structures and genomic information. - Sharmila Banerjee-Basu; Erik S. Ferlanti; Joseph F. Ryan 003; Andreas D. Baxevanis (Nucleic Acids Res., 1999)

The Homeodomain Resource: a prototype database for a large protein family. - Sharmila Banerjee-Basu; Joseph F. Ryan 003; Andreas D. Baxevanis (Nucleic Acids Res., 2000)

GeneMachine: gene prediction and sequence annotation. - Izabela Makalowska; Joseph F. Ryan 003; Andreas D. Baxevanis (Bioinform., 2001)

CnidBase: The Cnidarian Evolutionary Genomics Database. - Joseph F. Ryan 003; John R. Finnerty (Nucleic Acids Res., 2003)

StellaBase: The Nematostella vectensis Genomics Database. - James C. Sullivan; Joseph F. Ryan 003; James A. Watson; Jeramy Webb; James C. Mullikin; Daniel Rokhsar; John R. Finnerty (Nucleic Acids Res., 2006)

The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. - R. Travis Moreland; Joseph F. Ryan 003; Christopher Pan; Andreas D. Baxevanis (Database J. Biol. Databases Curation, 2009)

The mid-developmental transition and the evolution of animal body plans. - Michal Levin; Leon Anavy; Alison G. Cole; Eitan Winter; Natalia Mostov; Sally Khair; Naftalie Senderovich; Ekaterina Kovalev; David H. Silver; Martin Feder; Selene L. Fernandez-Valverde; Nagayasu Nakanishi; et al. (Nat., 2016)

The Mnemiopsis Genome Project Portal: integrating new gene expression resources and improving data visualization. - R. Travis Moreland; Anh-Dao Nguyen; Joseph F. Ryan 003; Andreas D. Baxevanis (Database J. Biol. Databases Curation, 2020)

ANISEED 2019: 4D exploration of genetic data for an extended range of tunicates. - Justine Dardaillon; Delphine Dauga; Paul Simion; Emmanuel Faure; Takeshi A. Onuma; Melissa B. DeBiasse; Alexandra Louis; Kazuhiro R. Nitta; Magali Naville; Lydia Besnardeau; Wendy Reeves; Kai Wang 084; et al. (Nucleic Acids Res., 2020)