Original Synteny. - Vincent Ferretti; Joseph H. Nadeau; David Sankoff (CPM, 1996)

Conserved Synteny As a Measure of Genomic Distance. - David Sankoff; Joseph H. Nadeau (Discret. Appl. Math., 1996)

Conserved Segment Identification. - David Sankoff; Vincent Ferretti; Joseph H. Nadeau (J. Comput. Biol., 1997)

Genome Halving. - Nadia El-Mabrouk; Joseph H. Nadeau; David Sankoff (CPM, 1998)

Pathways Database System: An Integrated Set of Tools for Biological Pathways. - Wanhong Xu; Larkshmi Krishnamurthy; Murat Tasan; Gultekin Özsoyoglu; Joseph H. Nadeau; Z. Meral Özsoyoglu; Greg Schaeffer (SAC, 2003)

Pathways Database System: An Integrated System for Biological Pathways. - Larkshmi Krishnamurthy; Joseph H. Nadeau; Gultekin Özsoyoglu; Z. Meral Özsoyoglu; Greg Schaeffer; Murat Tasan; Wanhong Xu (Bioinform., 2003)

Pathways Database System. - Z. Meral Özsoyoglu; Joseph H. Nadeau; Gultekin Özsoyoglu (OMICS, 2003)

Towards an Integrated Software System for Biological Pathways. - Z. Meral Özsoyoglu; Joseph H. Nadeau; Gultekin Özsoyoglu; Murat Tasan (IEEE Data Eng. Bull., 2004)

Improved Duplication Models for Proteome Network Evolution. - Gürkan Bebek; Petra Berenbrink; Colin Cooper; Tom Friedetzky; Joseph H. Nadeau; Süleyman Cenk Sahinalp (Systems Biology and Regulatory Genomics, 2005)

RNA-RNA Interaction Prediction and Antisense RNA Target Search. - Can Alkan; Emre Karakoç; Joseph H. Nadeau; Süleyman Cenk Sahinalp; Kaizhong Zhang (J. Comput. Biol., 2006)

The degree distribution of the generalized duplication model. - Gürkan Bebek; Petra Berenbrink; Colin Cooper; Tom Friedetzky; Joseph H. Nadeau; Süleyman Cenk Sahinalp (Theor. Comput. Sci., 2006)

Bugs, Guts and Fat - A Systems Approach to the Metabolic 'Axis of Evil'. - Joseph H. Nadeau (APBC, 2007)

Strangeness-based feature weighting and classification of gene expression profiles. - Haifeng Shao; Bei Yu 002; Joseph H. Nadeau (SAC, 2008)