Using Reconfigurable Computing to Accelerate Simulation Applications. - James M. McCollum; Joseph M. Lancaster; Gregory D. Peterson (Engineering of Reconfigurable Systems and Algorithms, 2003)

Biosequence Similarity Search on the Mercury System. - Praveen Krishnamurthy; Jeremy Buhler; Roger D. Chamberlain; Mark A. Franklin; Kwame Gyang; Joseph M. Lancaster (ASAP, 2004)

FPGA-accelerated seed generation in Mercury BLASTP. - Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (FCCM, 2007)

A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP. - Brandon Harris; Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (FPL, 2007)

Preliminary results in accelerating profile HMM search on FPGAs. - Arpith C. Jacob; Joseph M. Lancaster; Jeremy D. Buhler; Roger D. Chamberlain (IPDPS, 2007)

Biosequence Similarity Search on the Mercury System. - Praveen Krishnamurthy; Jeremy Buhler; Roger D. Chamberlain; Mark A. Franklin; Kwame Gyang; Arpith C. Jacob; Joseph M. Lancaster (J. VLSI Signal Process., 2007)

Understanding the performance of streaming applications deployed on hybrid systems. - Joseph M. Lancaster; Ron Cytron; Roger D. Chamberlain (IPDPS, 2008)

Visions for application development on hybrid computing systems. - Roger D. Chamberlain; Joseph M. Lancaster; Ron K. Cytron (Parallel Comput., 2008)

Mercury BLASTP: Accelerating Protein Sequence Alignment. - Arpith C. Jacob; Joseph M. Lancaster; Jeremy Buhler; Brandon Harris; Roger D. Chamberlain (ACM Trans. Reconfigurable Technol. Syst., 2008)

Efficient runtime performance monitoring of FPGA-based applications. - Joseph M. Lancaster; Jeremy D. Buhler; Roger D. Chamberlain (SoCC, 2009)

Acceleration of ungapped extension in Mercury BLAST. - Joseph M. Lancaster; Jeremy Buhler; Roger D. Chamberlain (Microprocess. Microsystems, 2009)

Deadlock-avoidance for streaming applications with split-join structure: Two case studies. - Peng Li; Kunal Agrawal 001; Jeremy Buhler; Roger D. Chamberlain; Joseph M. Lancaster (ASAP, 2010)

Better Languages for More Effective Designing. - Roger D. Chamberlain; Joseph M. Lancaster (ERSA, 2010)

TimeTrial: A low-impact performance profiler for streaming data applications. - Joseph M. Lancaster; E. F. Berkley Shands; Jeremy D. Buhler; Roger D. Chamberlain (ASAP, 2011)

Crossing Boundaries in TimeTrial: Monitoring Communications across Architecturally Diverse Computing Platforms. - Joseph M. Lancaster; Joseph G. Wingbermuehle; Jonathan C. Beard; Roger D. Chamberlain (EUC, 2011)

Asking for Performance: Exploiting Developer Intuition to Guide Instrumentation with TimeTrial. - Joseph M. Lancaster; Joseph G. Wingbermuehle; Roger D. Chamberlain (HPCC, 2011)