Toward efficient morphological shape representation. - Joseph M. Reinhardt; William E. Higgins (ICASSP (5), 1993)

Flexible search-based approach for morphological shape decomposition. - Joseph M. Reinhardt; William E. Higgins (VCIP, 1993)

Shape Representation: Comparison between the Morphological Skeleton and Morphological Shape Decomposition. - Joseph M. Reinhardt; William E. Higgins (ICIP (2), 1994)

Automatic Generation of Image-Segmentation Processes. - Joseph M. Reinhardt; William E. Higgins (ICIP (3), 1994)

Semiautomatic construction of 3D medical image-segmentation processes. - William E. Higgins; Joseph M. Reinhardt; Werner L. Sharp (VBC, 1994)

Strategy for shape-based image analysis. - Joseph M. Reinhardt; William E. Higgins (ICIP, 1995)

Comparison Between the Morphological Skeleton and Morphological Shape Decomposition. - Joseph M. Reinhardt; William E. Higgins (IEEE Trans. Pattern Anal. Mach. Intell., 1996)

Efficient morphological shape representation. - Joseph M. Reinhardt; William E. Higgins (IEEE Trans. Image Process., 1996)

Accurate Measurement of Intrathoracic Airways. - Joseph M. Reinhardt; N. D. D'Souza; Eric A. Hoffman (IEEE Trans. Medical Imaging, 1997)

Cue-Based Segmentation of 4D Cardiac Image Sequences. - Joseph M. Reinhardt; Andrien J. Wang; Thomas P. Weldon; William E. Higgins (Comput. Vis. Image Underst., 2000)

Integrated System for Objective Assessment of Global and Regional Lung Structure. - Joseph M. Reinhardt; Junfeng Guo; Li Zhang; D. Bilgen; Shiying Hu; R. Uppaluri; Ryan M. Long; O. I. Saba; Geoffrey McLennan; Milan Sonka; Eric A. Hoffman (MICCAI, 2001)

Automatic generation of object shape models and their application to tomographic image segmentation. - Baojun Li; Joseph M. Reinhardt (Image Processing, 2001)

Automatic Lung Segmentation for Accurate Quantitation of Volumetric X-ray CT Images. - Shiying Hu; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2001)

Integrated system for CT-based assessment of parenchymal lung disease. - Junfeng Guo; Joseph M. Reinhardt; Hiroko Kitaoka; Li Zhang; Milan Sonka; Geoffrey McLennan; Eric A. Hoffman (ISBI, 2002)

Automated Nomenclature Labeling of the Bronchial Tree in 3D-CT Lung Images. - Hiroko Kitaoka; Yongsup Park; Juerg Tschirren; Joseph M. Reinhardt; Milan Sonka; Geoffrey McLennan; Eric A. Hoffman (MICCAI (2), 2002)

Segmentation, Skeletonization, and Branchpoint Matching - A Fully Automated Quantitative Evaluation of Human Intrathoracic Airway Trees. - Juerg Tschirren; Kálmán Palágyi; Joseph M. Reinhardt; Eric A. Hoffman; Milan Sonka (MICCAI (2), 2002)

Classification of mammographic masses: comparison between Backpropagation Neural Network (BNN) and human readers. - Lina Arbach; Darus L. Bennett; Joseph M. Reinhardt; Ghassan Fallouh (Image Processing, 2003)

Segmentation and Analysis of the Human Airway Tree from 3D X-ray CT Images. - Deniz Aykac; Eric A. Hoffman; Geoffrey McLennan; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2003)

Classification of Breast MRI Lesions Using A Backpropagation Neural Network (BNN). - Lina Arbach; Alan Stolpen; Joseph M. Reinhardt (ISBI, 2004)

Regional Lung Ventilation from Volumetric CT Scans Using Image Warping Functions. - Smita Krishnan; Kenneth Beck; Joseph M. Reinhardt; Katherine Carlson; Eric A. Hoffman; Brett Simon; Richard Albert (ISBI, 2004)

Smoothing lung segmentation surfaces in 3D x-ray CT images using anatomic guidance. - Soumik Ukil; Joseph M. Reinhardt (Image Processing, 2004)

The use and benefit of stereology in choosing a CT scanning protocol for the lung. - Zvi Markowitz; Murray H. Loew; Joseph M. Reinhardt (Image Processing, 2005)

3D pulmonary airway color image reconstruction via shape from shading and virtual bronchoscopy imaging techniques. - Melissa J. Suter; Joseph M. Reinhardt; Eric A. Hoffman; Geoffrey McLennan (Image Processing, 2005)

Automatic lung lobe segmentation in x-ray CT images by 3D watershed transform using anatomic information from the segmented airway tree. - Soumik Ukil; Eric A. Hoffman; Joseph M. Reinhardt (Image Processing, 2005)

Establishing multi-modality datasets with the incorporation of 3D histopathology for soft tissue classification. - Jessica de Ryk; Jacqueline Thiesse; Joseph M. Reinhardt; Eric A. Hoffman; Geoffrey McLennan (Image Processing, 2006)

Automatic segmentation of pulmonary fissures in x-ray CT images using anatomic guidance. - Soumik Ukil; Milan Sonka; Joseph M. Reinhardt (Image Processing, 2006)

Atlas-driven lung lobe segmentation in volumetric X-ray CT images. - Li Zhang; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2006)

Registration-Derived Estimates of Local Lung Expansion as Surrogates for Regional Ventilation. - Joseph M. Reinhardt; Gary E. Christensen; Eric A. Hoffman; Kai Ding 003; Kunlin Cao (IPMI, 2007)

Pulmonary CT Image Analysis and Computer Aided Detection. - Milan Sonka; Juerg Tschirren; Soumik Ukil; X. Zhang; Ye Xu; Joseph M. Reinhardt; Edwin J. R. van Beek; Geoffrey McLennan; Eric A. Hoffman (ISBI, 2007)

Feature-based pairwise retinal image registration by radial distortion correction. - Sangyeol Lee; Michael D. Abràmoff; Joseph M. Reinhardt (Image Processing, 2007)

Three-dimensional histopathology of lung cancer with multimodality image registration. - Jessica de Ryk; Jamie Weydert; Gary E. Christensen; Jacqueline Thiesse; Eman Namati; Joseph M. Reinhardt; Eric A. Hoffman; Geoffrey McLennan (Image Processing, 2007)

Guest Editorial: Medical Imaging Informatics - an Information Processing from Image Formation to Visualization. - Jerome Zhengrong Liang; Hongbing Lu; Dimitris N. Metaxas; Joseph M. Reinhardt (Int. J. Image Graph., 2007)

Tracking the hyoid bone in videofluoroscopic swallowing studies. - Patrick M. Kellen; Darci Becker; Joseph M. Reinhardt; Douglas van Daele (Image Processing, 2008)

Retinal image mosaicing using the radial distortion correction model. - Sangyeol Lee; Michael D. Abràmoff; Joseph M. Reinhardt (Image Processing, 2008)

Registration-based estimates of local lung tissue expansion compared to xenon CT measures of specific ventilation. - Joseph M. Reinhardt; Kai Ding 003; Kunlin Cao; Gary E. Christensen; Eric A. Hoffman; Shalmali V. Bodas (Medical Image Anal., 2008)

Evaluation of Lobar Biomechanics during Respiration Using Image Registration. - Kai Ding 003; Youbing Yin; Kunlin Cao; Gary E. Christensen; Ching-Long Lin; Eric A. Hoffman; Joseph M. Reinhardt (MICCAI (1), 2009)

Anatomy-Guided Lung Lobe Segmentation in X-Ray CT Images. - Soumik Ukil; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2009)

Automated measurement of retinal blood vessel tortuosity. - Vinayak S. Joshi; Joseph M. Reinhardt; Michael D. Abràmoff (Computer-Aided Diagnosis, 2010)

Tissue volume and vesselness measure preserving nonrigid registration of lung CT images. - Kunlin Cao; Kai Ding 003; Gary E. Christensen; Joseph M. Reinhardt (Image Processing, 2010)

Retinal atlas statistics from color fundus images. - Sangyeol Lee; Michael D. Abràmoff; Joseph M. Reinhardt (Image Processing, 2010)

Unifying Vascular Information in Intensity-Based Nonrigid Lung CT Registration. - Kunlin Cao; Kai Ding 003; Gary E. Christensen; Madhavan L. Raghavan; Ryan E. Amelon; Joseph M. Reinhardt (WBIR, 2010)

Objective and expert-independent validation of retinal image registration algorithms by a projective imaging distortion model. - Sangyeol Lee; Joseph M. Reinhardt; Philippe C. Cattin; Michael D. Abràmoff (Medical Image Anal., 2010)

Time-varying lung ventilation analysis of 4DCT using image registration. - Kai Ding 003; Kaifang Du; Kunlin Cao; Gary E. Christensen; Joseph M. Reinhardt (ICASSP, 2011)

Quantification of regional lung ventilation from tagged hyperpolarized helium-3 MRI. - Kai Ding 003; Wilson Miller; Kunlin Cao; Gary E. Christensen; Joseph M. Reinhardt; Stanley Benedict; Bruce Libby; Ke Sheng (ISBI, 2011)

Registration-based measurement of regional expiration volume ratio using dynamic 4DCT imaging. - Kaifang Du; Kai Ding 003; Kunlin Cao; John E. Bayouth; Gary E. Christensen; Joseph M. Reinhardt (ISBI, 2011)

Segmentation of pathological and diseased lung tissue in CT images using a graph-search algorithm. - Panfang Hua; Qi Song 001; Milan Sonka; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2011)

Identification and reconnection of interrupted vessels in retinal vessel segmentation. - Vinayak S. Joshi; Mona Kathryn Garvin; Joseph M. Reinhardt; Michael D. Abràmoff (ISBI, 2011)

Retinal vessel width measurements based on a graph-theoretic method. - Xiayu Xu; Meindert Niemeijer; Qi Song 001; Mona Kathryn Garvin; Joseph M. Reinhardt; Michael D. Abràmoff (ISBI, 2011)

Automated method for the identification and analysis of vascular tree structures in retinal vessel network. - Vinayak S. Joshi; Mona Kathryn Garvin; Joseph M. Reinhardt; Michael D. Abràmoff (Computer-Aided Diagnosis, 2011)

Simultaneous automatic detection of optic disc and fovea on fundus photographs. - Xiayu Xu; Mona Kathryn Garvin; Michael D. Abràmoff; Joseph M. Reinhardt (Image Processing, 2011)

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. - Keelin Murphy; Bram van Ginneken; Joseph M. Reinhardt; Sven Kabus; Kai Ding 003; Xiang Deng; Kunlin Cao; Kaifang Du; Gary E. Christensen; Vincent Garcia; Tom Vercauteren; Nicholas Ayache; et al. (IEEE Trans. Medical Imaging, 2011)

Vessel Boundary Delineation on Fundus Images Using Graph-Based Approach. - Xiayu Xu; Meindert Niemeijer; Qi Song 001; Milan Sonka; Mona Kathryn Garvin; Joseph M. Reinhardt; Michael D. Abràmoff (IEEE Trans. Medical Imaging, 2011)

Automated artery-venous classification of retinal blood vessels based on structural mapping method. - Vinayak S. Joshi; Mona Kathryn Garvin; Joseph M. Reinhardt; Michael D. Abràmoff (Computer-Aided Diagnosis, 2012)

Retinal vessel width measurement at branching points using an improved electric field theory-based graph approach. - Xiayu Xu; Michael D. Abràmoff; Geir Bertelsen; Joseph M. Reinhardt (Image Processing, 2012)

Tracking Regional Tissue Volume and Function Change in Lung Using Image Registration. - Kunlin Cao; Gary E. Christensen; Kai Ding 003; Kaifang Du; Madhavan L. Raghavan; Ryan E. Amelon; Kimberly M. Baker; Eric A. Hoffman; Joseph M. Reinhardt (Int. J. Biomed. Imaging, 2012)

Improving Intensity-Based Lung CT Registration Accuracy Utilizing Vascular Information. - Kunlin Cao; Kai Ding 003; Joseph M. Reinhardt; Gary E. Christensen (Int. J. Biomed. Imaging, 2012)

Extraction of Airways From CT (EXACT'09). - Pechin Lo; Bram van Ginneken; Joseph M. Reinhardt; Tarunashree Yavarna; Pim A. de Jong; Benjamin Irving; Catalin I. Fetita; Margarete Ortner; Romulo Pinho; Jan Sijbers; Marco Feuerstein; Anna Fabijanska; et al. (IEEE Trans. Medical Imaging, 2012)

Splat Feature Classification With Application to Retinal Hemorrhage Detection in Fundus Images. - Li Tang 002; Meindert Niemeijer; Joseph M. Reinhardt; Mona Kathryn Garvin; Michael D. Abràmoff (IEEE Trans. Medical Imaging, 2013)

Current-and Varifold-Based Registration of Lung Vessel and Airway Trees. - Yue Pan; Gary E. Christensen; Oguz C. Durumeric; Sarah E. Gerard; Joseph M. Reinhardt; Geoffrey D. Hugo (CVPR Workshops, 2016)

Tissue-Volume Preserving Deformable Image Registration for 4DCT Pulmonary Images. - Bowen Zhao; Gary E. Christensen; Joo Hyun Song; Yue Pan; Sarah E. Gerard; Joseph M. Reinhardt; Kaifang Du; Taylor Patton; John E. Bayouth; Geoffrey D. Hugo (CVPR Workshops, 2016)

Transfer Learning for Segmentation of Injured Lungs Using Coarse-to-Fine Convolutional Neural Networks. - Sarah E. Gerard; Jacob Herrmann; David W. Kaczka; Joseph M. Reinhardt (RAMBO+BIA+TIA@MICCAI, 2018)

Detecting Out-of-Phase Ventilation Using 4DCT to Improve Radiation Therapy for Lung Cancer. - Wei Shao 008; Taylor J. Patton; Sarah E. Gerard; Yue Pan; Joseph M. Reinhardt; John E. Bayouth; Oguz C. Durumeric; Gary E. Christensen (RAMBO+BIA+TIA@MICCAI, 2018)

Sensitivity analysis of Jacobian determinant used in treatment planning for lung cancer. - Wei Shao 008; Sarah E. Gerard; Yue Pan; Taylor J. Patton; Joseph M. Reinhardt; Oguz C. Durumeric; John E. Bayouth; Gary E. Christensen (Image Processing, 2018)

Pulmonary Lobe Segmentation Using A Sequence of Convolutional Neural Networks For Marginal Learning. - Sarah E. Gerard; Joseph M. Reinhardt (ISBI, 2019)

FissureNet: A Deep Learning Approach For Pulmonary Fissure Detection in CT Images. - Sarah E. Gerard; Taylor J. Patton; Gary E. Christensen; John E. Bayouth; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2019)

Automatic Quantification of Pulmonary Fissure Integrity: A Repeatability Analysis. - Zachary W. Althof; Sarah E. Gerard; Yue Pan; Gary E. Christensen; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2020)

Estimating Local Tissue Expansion in Thoracic Computed Tomography Images Using Convolutional Neural Networks. - Sarah E. Gerard; Joseph M. Reinhardt; Gary E. Christensen; Raúl San José Estépar (ISBI, 2020)

Assessment of Lung Biomechanics in COPD Using Image Registration. - Yue Pan; Gary E. Christensen; Oguz C. Durumeric; Sarah E. Gerard; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2020)

A Deep Learning Approach to Video Fluoroscopic Swallowing Exam Classification. - Patrick Wilhelm; Joseph M. Reinhardt; Douglas van Daele (ISBI, 2020)

Registration-Invariant Biomechanical Features for Disease Staging of COPD in SPIROMICS. - Muhammad F. A. Chaudhary; Yue Pan; Di Wang; Sandeep Bodduluri; Surya P. Bhatt; Alejandro P. Comellas; Eric A. Hoffman; Gary E. Christensen; Joseph M. Reinhardt (TIA@MICCAI, 2020)

CT Image Segmentation for Inflamed and Fibrotic Lungs Using a Multi-Resolution Convolutional Neural Network. - Sarah E. Gerard; Jacob Herrmann; Yi Xin; Kevin T. Martin; Emanuele Rezoagli; Davide Ippolito; Giacomo Bellani; Maurizio Cereda; Junfeng Guo; Eric A. Hoffman; David W. Kaczka; Joseph M. Reinhardt (CoRR, 2020)

Multi-resolution convolutional neural networks for fully automated segmentation of acutely injured lungs in multiple species. - Sarah E. Gerard; Jacob Herrmann; David W. Kaczka; Guido Musch; Ana Fernandez-Bustamante; Joseph M. Reinhardt (Medical Image Anal., 2020)

N-Phase Local Expansion Ratio for Characterizing Out-of-Phase Lung Ventilation. - Wei Shao 008; Taylor J. Patton; Sarah E. Gerard; Yue Pan; Joseph M. Reinhardt; Oguz C. Durumeric; John E. Bayouth; Gary E. Christensen (IEEE Trans. Medical Imaging, 2020)

Recursive Refinement Network for Deformable Lung Registration between Exhale and Inhale CT Scans. - Xinzi He; Jia Guo; Xuzhe Zhang; Hanwen Bi; Sarah E. Gerard; David W. Kaczka; Amin Motahari; Eric A. Hoffman; Joseph M. Reinhardt; R. Graham Barr; Elsa D. Angelini; Andrew Laine (CoRR, 2021)

Geodesic density regression for correcting 4DCT pulmonary respiratory motion artifacts. - Wei Shao 008; Yue Pan; Oguz C. Durumeric; Joseph M. Reinhardt; John E. Bayouth; Mirabela Rusu; Gary E. Christensen (Medical Image Anal., 2021)

Single Volume Lung Biomechanics from Chest Computed Tomography Using a Mode Preserving Generative Adversarial Network. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Di Wang; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (ISBI, 2022)

Robust Measures of Image-Registration-Derived Lung Biomechanics in SPIROMICS. - Yue Pan; Di Wang; Muhammad F. A. Chaudhary; Wei Shao 008; Sarah E. Gerard; Oguz C. Durumeric; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt; Gary E. Christensen (J. Imaging, 2022)

PLOSL: Population learning followed by one shot learning pulmonary image registration using tissue volume preserving and vesselness constraints. - Di Wang; Yue Pan; Oguz C. Durumeric; Joseph M. Reinhardt; Eric A. Hoffman; Joyce D. Schroeder; Gary E. Christensen (Medical Image Anal., 2022)

Bridging the Task Barriers: Online Knowledge Distillation Across Tasks for Semi-supervised Mediastinal Segmentation in CT. - Muhammad F. A. Chaudhary; Seyed Soheil Hosseini; R. Graham Barr; Joseph M. Reinhardt; Eric A. Hoffman; Sarah E. Gerard (MLMI@MICCAI (1), 2023)

Automatic segmentation of lung findings in CT and application to Long COVID. - Diedre S. Carmo; Rosarie A. Tudas; Alejandro P. Comellas; Letícia Rittner; Roberto A. Lotufo; Joseph M. Reinhardt; Sarah E. Gerard (CoRR, 2023)

MEDPSeg: End-to-end segmentation of pulmonary structures and lesions in computed tomography. - Diedre S. Carmo; Jean Ribeiro; Alejandro P. Comellas; Joseph M. Reinhardt; Sarah E. Gerard; Letícia Rittner; Roberto A. Lotufo (CoRR, 2023)

Beyond Intensity Transforms: Medical Image Synthesis Under Large Deformation. - Muhammad F. A. Chaudhary; Joseph M. Reinhardt; Sarah E. Gerard (SASHIMI@MICCAI, 2024)

LungViT: Ensembling Cascade of Texture Sensitive Hierarchical Vision Transformers for Cross-Volume Chest CT Image-to-Image Translation. - Muhammad F. A. Chaudhary; Sarah E. Gerard; Gary E. Christensen; Christopher B. Cooper; Joyce D. Schroeder; Eric A. Hoffman; Joseph M. Reinhardt (IEEE Trans. Medical Imaging, 2024)

Uncertainty-Aware Test-Time Adaptation for Inverse Consistent Diffeomorphic Lung Image Registration. - Muhammad F. A. Chaudhary; Stephanie M. Aguilera; Arie Nakhmani; Joseph M. Reinhardt; Surya P. Bhatt; Sandeep Bodduluri (ISBI, 2025)