Thermodynamic Analysis of Interacting Nucleic Acid Strands. - Robert M. Dirks; Justin S. Bois; Joseph M. Schaeffer; Erik Winfree; Niles A. Pierce (SIAM Rev., 2007)

Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands. - Joseph Malcolm Schaeffer (2013)

Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands. - Joseph Malcolm Schaeffer; Chris Thachuk; Erik Winfree (DNA, 2015)

Inferring Parameters for an Elementary Step Model of DNA Structure Kinetics with Locally Context-Dependent Arrhenius Rates. - Sedigheh Zolaktaf; Frits Dannenberg; Xander Rudelis; Anne Condon; Joseph M. Schaeffer; Mark Schmidt 001; Chris Thachuk; Erik Winfree (DNA, 2017)