mol2sphere: spherical decomposition of multi-domain molecules for visualization and coarse grained spatial modeling. - Joseph Masison; Paul J. Michalski; Leslie M. Loew; Adam D. Schuyler (Bioinform., 2018)

A modular computational framework for medical digital twins. - Joseph Masison; Jonathan Beezley; Yu Mei; Henrique Assis Lopes Ribeiro; Adam C. Knapp; Luis Sordo Vieira; Bandita Adhikari; Yogesh Scindia; Michael Grauer; Brian Helba; William Schroeder; Borna Mehrad; et al. (Proc. Natl. Acad. Sci. USA, 2021)

Mathematical modeling reveals ferritin as the strongest cellular driver of dietary iron transfer block in enterocytes. - Joseph Masison; Pedro Mendes 001 (PLoS Comput. Biol., 2025)