Prediction and uncertainty in the analysis of gene expression profiles. - Rainer Spang; Carrie Blanchette; Harry Zuzan; Jeffrey R. Marks; Joseph Nevins; Mike West (Silico Biol., 2002)

DIG - a system for gene annotation and functional discovery. - Mark DeLong; Guang Yao; Quanli Wang; Adrian Dobra; Esther P. Black; Jeffrey T. Chang; Andrea Bild; Mike West; Joseph Nevins; Holly Dressman (Bioinform., 2005)

GATHER: a systems approach to interpreting genomic signatures. - Jeffrey T. Chang; Joseph Nevins (Bioinform., 2006)

Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer. - Min Xu; Ming-Chih J. Kao; Juan Nunez-Iglesias; Joseph Nevins; Mike West; Xianghong Jasmine Zhou (BIOCOMP, 2007)

Sensing and Integration of Erk and PI3K Signals by Myc. - Tae J. Lee; Guang Yao; Joseph Nevins; Lingchong You (PLoS Comput. Biol., 2008)

SIGNATURE: A workbench for gene expression signature analysis. - Jeffrey T. Chang; Michael L. Gatza; Joseph E. Lucas; William T. Barry; Peyton Vaughn; Joseph Nevins (BMC Bioinform., 2011)