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STAR: an integrated solution to management and visualization of sequencing data. - Tao Wang; Jie Liu; Li Shen; Julian Tonti-Filippini; Yun Zhu; Haiyang Jia; Ryan Lister; John W. Whitaker; Joseph R. Ecker; A. Harvey Millar; Bing Ren; Wei Wang 051 (Bioinform., 2013)

methylPipe and compEpiTools: a suite of R packages for the integrative analysis of epigenomics data. - Kamal Kishore; Stefano de Pretis; Ryan Lister; Marco J. Morelli; Valerio Bianchi; Bruno Amati; Joseph R. Ecker; Mattia Pelizzola (BMC Bioinform., 2015)

Integrative analysis of 111 reference human epigenomes Open. - Roadmap Epigenomics Consortium; Anshul Kundaje; Wouter Meuleman; Jason Ernst; Misha Bilenky; Angela Yen; Alireza Heravi Moussavi; Pouya Kheradpour; ZhiZhuo Zhang; Jianrong Wang; Michael J. Ziller; Viren Amin; et al. (Nat., 2015)

Chromatin architecture reorganization during stem cell differentiation Open. - Jesse R. Dixon; Inkyung Jung; Siddarth Selvaraj; Yin Shen; Jessica E. Antosiewicz-Bourget; Ahyoung Lee; Zhen Ye; Audrey Kim; Nisha Rajagopal; Wei Xie; Yarui Diao; Jing Liang; et al. (Nat., 2015)