xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes. - Nuo Liu; Tonatiuh A. Gonzalez; Jacob Fischer; Chan Hong; Michelle Johnson; Ross Mawhorter; Fabrizia Mugnatto; Rachael Soh; Shifa Somji; Joseph S. Wirth; Ran Libeskind-Hadas; Eliot C. Bush (BMC Bioinform., 2023)

primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other. - Joseph S. Wirth; Lee S. Katz; Grant M. Williams; Jessica C. Chen (J. Open Source Softw., 2024)