spolTools: online utilities for analyzing spoligotypes of the Mycobacterium tuberculosis complex. - Chaka Tang; Josephine F. Reyes; Fabio Luciani; Andrew R. Francis; Mark M. Tanaka (Bioinform., 2008)

Models of deletion for visualizing bacterial variation: an application to tuberculosis spoligotypes. - Josephine F. Reyes; Andrew R. Francis; Mark M. Tanaka (BMC Bioinform., 2008)

A Model-Based Bayesian Estimation of the Rate of Evolution of VNTR Loci in Mycobacterium tuberculosis. - R. Zachariah Aandahl; Josephine F. Reyes; Scott A. Sisson; Mark M. Tanaka (PLoS Comput. Biol., 2012)