Finding commonalities in rare diseases through the undiagnosed diseases network. - Josephine Yates; Alba Gutiérrez-Sacristán; Vianney Jouhet; Kimberly Leblanc; Cecilia Esteves; Thomas N. Desain; Nick Benik; Jason Stedman; Nathan P. Palmer; Guillaume Mellon; Isaac S. Kohane; Paul Avillach (J. Am. Medical Informatics Assoc., 2021)

Deciphering the etiology and role in oncogenic transformation of the CpG island methylator phenotype: a pan-cancer analysis. - Josephine Yates; Valentina Boeva (Briefings Bioinform., 2022)

Histopathological Image Classification with Cell Morphology Aware Deep Neural Networks. - Andrey Ignatov; Josephine Yates; Valentina Boeva (CVPR Workshops, 2024)

Dissecting the role of transcriptional and epigenetic variability in cancer initiation and progression. - Josephine Yates (2025)

UniversalEPI: a generalized attention-based deep ensemble model to accurately predict enhancer-promoter interactions across diverse cell types and conditions. - Aayush Grover; Lin Zhang 031; Till Muser; Simeon Haefliger; Minjia Wang; Josephine Yates; Eliezer M. Van Allen; Fabian J. Theis; Ignacio Ibarra; Ekaterina A. Krymova; Valentina Boeva (Zenodo, 2025)