Harmonic analysis with probabilistic graphical models. - Christopher Raphael; Josh Stoddard (ISMIR, 2003)

Well-Tempered Spelling: A Key Invariant Pitch Spelling Algorithm. - Josh Stoddard; Christopher Raphael; Paul E. Utgoff (ISMIR, 2004)

Functional Harmonic Analysis Using Probabilistic Models. - Christopher Raphael; Josh Stoddard (Comput. Music. J., 2004)