General purpose molecular dynamics simulations fully implemented on graphics processing units. - Joshua A. Anderson; Chris D. Lorenz; Alex Travesset (J. Comput. Phys., 2008)

Rigid body constraints realized in massively-parallel molecular dynamics on graphics processing units. - Trung Dac Nguyen; Carolyn L. Phillips; Joshua A. Anderson; Sharon C. Glotzer (Comput. Phys. Commun., 2011)

Pseudo-random number generation for Brownian Dynamics and Dissipative Particle Dynamics simulations on GPU devices. - Carolyn L. Phillips; Joshua A. Anderson; Sharon C. Glotzer (J. Comput. Phys., 2011)

Optimal Fillings - A new spatial subdivision problem related to packing and covering - Carolyn L. Phillips; Joshua A. Anderson; Elizabeth R. Chen; Sharon C. Glotzer (CoRR, 2012)

Massively parallel Monte Carlo for many-particle simulations on GPUs. - Joshua A. Anderson; Eric Jankowski; Thomas L. Grubb; Michael Engel; Sharon C. Glotzer (J. Comput. Phys., 2013)

Strong scaling of general-purpose molecular dynamics simulations on GPUs. - Jens Glaser; Trung Dac Nguyen; Joshua A. Anderson; Pak Lui; Filippo Spiga; Jaime A. Millan; David C. Morse; Sharon C. Glotzer (Comput. Phys. Commun., 2015)

Scalable Metropolis Monte Carlo for simulation of hard shapes. - Joshua A. Anderson; M. Eric Irrgang; Sharon C. Glotzer (Comput. Phys. Commun., 2016)

Efficient neighbor list calculation for molecular simulation of colloidal systems using graphics processing units. - Michael P. Howard; Joshua A. Anderson; Arash Nikoubashman; Sharon C. Glotzer; Athanassios Z. Panagiotopoulos (Comput. Phys. Commun., 2016)

GPU accelerated Discrete Element Method (DEM) molecular dynamics for conservative, faceted particle simulations. - Matthew P. Spellings; Ryan L. Marson; Joshua A. Anderson; Sharon C. Glotzer (J. Comput. Phys., 2017)

Analyzing Particle Systems for Machine Learning and Data Visualization with freud. - Bradley D. Dice; Vyas Ramasubramani; Eric S. Harper; Matthew P. Spellings; Joshua A. Anderson; Sharon C. Glotzer (SciPy, 2019)

How to Professionally Develop Reusable Scientific Software - And When Not To. - Carl S. Adorf; Vyas Ramasubramani; Joshua A. Anderson; Sharon C. Glotzer (Comput. Sci. Eng., 2019)

HOOMD-blue version 3.0 A Modern, Extensible, Flexible, Object-Oriented API for Molecular Simulations. - Brandon L. Butler; Vyas Ramasubramani; Joshua A. Anderson; Sharon C. Glotzer (SciPy, 2020)

freud: A software suite for high throughput analysis of particle simulation data. - Vyas Ramasubramani; Bradley D. Dice; Eric S. Harper; Matthew P. Spellings; Joshua A. Anderson; Sharon C. Glotzer (Comput. Phys. Commun., 2020)