Hardware implementation of a neural network pattern shaper algorithm. - Elizabeth J. Brauer; James J. Abbas; Brian Callaway; Joshua Colvin; John Farris (IJCNN, 1999)

Simulation of large-scale rule-based models. - Joshua Colvin; Michael I. Monine; James R. Faeder; William S. Hlavacek; Daniel D. Von Hoff; Richard G. Posner (Bioinform., 2009)

RuleMonkey: software for stochastic simulation of rule-based models. - Joshua Colvin; Michael I. Monine; Ryan N. Gutenkunst; William S. Hlavacek; Daniel D. Von Hoff; Richard G. Posner (BMC Bioinform., 2010)

BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments. - Brandon R. Thomas; Lily A. Chylek; Joshua Colvin; Suman Sirimulla; Andrew H. A. Clayton; William S. Hlavacek; Richard G. Posner (Bioinform., 2016)

Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit. - Jacob Neumann; Yen Ting Lin; Abhishek Mallela; Ely F. Miller; Joshua Colvin; Abell T. Duprat; Ye Chen; William S. Hlavacek; Richard G. Posner (Bioinform., 2022)