Development of laboratory and computational techniques for optimal and quantitative understanding of cellular metabolic networks. - Xiao-Jiang Feng; Joshua D. Rabinowitz; Herschel Rabitz (IPDPS, 2008)

Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies. - Peter A. DiMaggio Jr.; Scott R. McAllister; Christodoulos A. Floudas; Xiao-Jiang Feng; Joshua D. Rabinowitz; Herschel Rabitz (BMC Bioinform., 2008)

Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae. - Patrick H. Bradley; Matthew J. Brauer; Joshua D. Rabinowitz; Olga G. Troyanskaya (PLoS Comput. Biol., 2009)

Robustness in Glyoxylate Bypass Regulation. - Guy Shinar; Joshua D. Rabinowitz; Uri Alon 001 (PLoS Comput. Biol., 2009)

A network flow model for biclustering via optimal re-ordering of data matrices. - Peter A. DiMaggio Jr.; Scott R. McAllister; Christodoulos A. Floudas; Xiao-Jiang Feng; Joshua D. Rabinowitz; Herschel Rabitz (J. Glob. Optim., 2010)

Achieving Optimal Growth through Product Feedback Inhibition in Metabolism. - Sidhartha Goyal; Jie Yuan; Thomas Chen; Joshua D. Rabinowitz; Ned S. Wingreen (PLoS Comput. Biol., 2010)