CT image noise reduction using rotational-invariant feature in Stockwell transform. - Jian Su; Zhoubo Li; Lifeng Yu; Joshua D. Warner; Daniel J. Blezek; Bradley J. Erickson (Image Processing, 2014)

scikit-image: Image processing in Python. - Stéfan van der Walt; Johannes L. Schönberger; Juan Nunez-Iglesias; François Boulogne; Joshua D. Warner; Neil Yager; Emmanuelle Gouillart; Tony Yu (CoRR, 2014)

Supervised Segmentation of Polycystic Kidneys: a New Application for Stereology Data. - Joshua D. Warner; Maria V. Irazabal; Ganapathy Krishnamurthi; Bernard F. King; Vicente E. Torres; Bradley J. Erickson (J. Digit. Imaging, 2014)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Michael Dayan; Alexandre Manhães-Savio; Michael Philipp Notter; et al. (Zenodo, 2016)

Partial volume morphology: eliminating precision loss in binary morphology. - Joshua D. Warner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Jason Wong; Michael Dayan; Alexandre Manhães-Savio; et al. (Zenodo, 2017)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

ResNCT: A Deep Learning Model for the Synthesis of Nephrographic Phase Images in CT Urography. - Syed Jamal Safdar Gardezi; Lucas Aronson; Peter Wawrzyn; Hongkun Yu 004; E. Jason Abel; Daniel D. Shapiro; Meghan G. Lubner; Joshua D. Warner; Giuseppe Toia; Lu Mao; Pallavi Tiwari; Andrew L. Wentland (CoRR, 2024)

Vision-Language Modeling in PET/CT for Visual Grounding of Positive Findings. - Zachary Huemann; Samuel Church; Joshua D. Warner; Daniel Tran; Xin Tie; Alan B. McMillan; Junjie Hu 001; Steve Y. Cho; Meghan G. Lubner; Tyler J. Bradshaw (CoRR, 2025)

3D Nephrographic Image Synthesis in CT Urography with the Diffusion Model and Swin Transformer. - Hongkun Yu 004; Syed Jamal Safdar Gardezi; E. Jason Abel; Daniel D. Shapiro; Meghan G. Lubner; Joshua D. Warner; Matthew Smith; Giuseppe Toia; Lu Mao; Pallavi Tiwari; Andrew L. Wentland (CoRR, 2025)

From Embeddings to Accuracy: Comparing Foundation Models for Radiographic Classification. - Xue Li; Jameson Merkow; Noel C. F. Codella; Alberto Santamaría-Pang; Naiteek Sangani; Alexander Ersoy; Christopher Burt; John W. Garrett; Richard J. Bruce; Joshua D. Warner; Tyler J. Bradshaw; Ivan Tarapov; et al. (CoRR, 2025)