Fast Feldkamp reconstruction based on focus of attention and distributed computing. - Jens Gregor; Shaun S. Gleason; Michael J. Paulus; Joshua Cates (Int. J. Imaging Syst. Technol., 2002)

Interactive, GPU-Based Level Sets for 3D Segmentation. - Aaron E. Lefohn; Joshua E. Cates; Ross T. Whitaker (MICCAI (1), 2003)

GIST: an interactive, GPU-based level set segmentation tool for 3D medical images. - Joshua E. Cates; Aaron E. Lefohn; Ross T. Whitaker (Medical Image Anal., 2004)

Case study: an evaluation of user-assisted hierarchical watershed segmentation. - Joshua E. Cates; Ross T. Whitaker; Greg M. Jones (Medical Image Anal., 2005)

The Center for Integrative Biomedical Computing: advancing biomedical science with open source. - Joshua E. Cates; David M. Weinstein; McKay Davis (ISBI, 2006)

Shape Modeling and Analysis with Entropy-Based Particle Systems. - Joshua E. Cates; P. Thomas Fletcher; Martin Andreas Styner; Martha Elizabeth Shenton; Ross T. Whitaker (IPMI, 2007)

A shape analysis framework for small animal phenotyping with application to mice with a targeted disruption of Hoxd11. - Joshua E. Cates; P. Thomas Fletcher; Zachary Warnock; Ross T. Whitaker (ISBI, 2008)

Cortical correspondence using entropy-based particle systems and local features. - Ipek Oguz; Joshua E. Cates; P. Thomas Fletcher; Ross T. Whitaker; Derek Cool; Stephen R. Aylward; Martin Andreas Styner (ISBI, 2008)

Particle-Based Shape Analysis of Multi-object Complexes. - Joshua E. Cates; P. Thomas Fletcher; Martin Styner; Heather Cody Hazlett; Ross T. Whitaker (MICCAI (1), 2008)

Cortical Correspondence with Probabilistic Fiber Connectivity. - Ipek Oguz; Marc Niethammer; Joshua E. Cates; Ross T. Whitaker; P. Thomas Fletcher; Clement Vachet; Martin Styner (IPMI, 2009)

Particle Based Shape Regression of Open Surfaces with Applications to Developmental Neuroimaging. - Manasi Datar; Joshua E. Cates; P. Thomas Fletcher; Sylvain Gouttard; Guido Gerig; Ross T. Whitaker (MICCAI (1), 2009)

Shape Modeling and Analysis with Entropy-Based Particle Systems. - Joshua Cates (2010)

Group-wise automatic mesh-based analysis of cortical thickness. - Clement Vachet; Heather Cody Hazlett; Marc Niethammer; Ipek Oguz; Joshua E. Cates; Ross T. Whitaker; Joseph Piven; Martin Styner (Image Processing, 2011)

Automatic segmentation of the left atrium from MRI images using salient feature and contour evolution. - Liangjia Zhu; Yi Gao 002; Anthony J. Yezzi; Robert S. MacLeod; Joshua Cates; Allen R. Tannenbaum (EMBC, 2012)

Automatic classification of scar tissue in late gadolinium enhancement cardiac MRI for the assessment of left-atrial wall injury after radiofrequency ablation. - Daniel Perry; Alan Morris; Nathan Burgon; Christopher McGann; Robert S. MacLeod; Joshua Cates (Computer-Aided Diagnosis, 2012)

A point-correspondence approach to describing the distribution of image features on anatomical surfaces, with application to atrial fibrillation. - Gregory Gardner; Alan Morris; Koji Higuchi; Rob S. MacLeod; Joshua Cates (ISBI, 2013)

Geodesic Distances to Landmarks for Dense Correspondence on Ensembles of Complex Shapes. - Manasi Datar; Ilwoo Lyu; Sun Hyung Kim; Joshua E. Cates; Martin Andreas Styner; Ross T. Whitaker (MICCAI (2), 2013)

A Practical Algorithm for Improving Localization and Quantification of Left Ventricular Scar. - Brian Zenger; Joshua Cates; Alan Morris; Eugene G. Kholmovski; Alexander Au; Ravi Ranjan; Nazem Akoum; Christopher McGann; Brent Wilson 003; Nassir Marrouche; Frederick T. Han; Rob S. MacLeod (CinC, 2014)

Statistical Shape Model Construction of Lumbar Vertebrae and Intervertebral Discs in Segmentation for Discectomy Surgery Simulation. - Rabia Haq; Joshua Cates; David A. Besachio; Roderick C. Borgie; Michel A. Audette (CSI@MICCAI, 2015)

A Kalman Filtering Perspective for Multiatlas Segmentation. - Yi Gao 002; Liangjia Zhu; Joshua Cates; Rob S. MacLeod; Sylvain Bouix; Allen R. Tannenbaum (SIAM J. Imaging Sci., 2015)

Entropy-based particle correspondence for shape populations. - Ipek Oguz; Joshua E. Cates; Manasi Datar; Beatriz Paniagua; P. Thomas Fletcher; Clement Vachet; Martin Styner; Ross T. Whitaker (Int. J. Comput. Assist. Radiol. Surg., 2016)

Deep Learning for End-to-End Atrial Fibrillation Recurrence Estimation. - Riddhish Bhalodia; Anupama Goparaju; Tim Sodergren; Ross T. Whitaker; Alan Morris; Evgueni Kholmovski; Nassir Marrouche; Joshua Cates; Shireen Y. Elhabian (CinC, 2018)

Interactive Exploration of Left Atrium Population-Level Morphology in Atrial Fibrillation Patients. - Tim Sodergren; Anupama Goparaju; Alan Morris; Evgueni Kholmovski; Nassir Marrouche; Joshua Cates; Shireen Y. Elhabian (CinC, 2018)

Mixture Modeling of Global Shape Priors and Autoencoding Local Intensity Priors for Left Atrium Segmentation. - Tim Sodergren; Riddhish Bhalodia; Ross T. Whitaker; Joshua Cates; Nassir Marrouche; Shireen Y. Elhabian (STACOM@MICCAI, 2018)

Does Alignment in Statistical Shape Modeling of Left Atrium Appendage Impact Stroke Prediction? - Riddhish Bhalodia; Archanasri Subramanian; Alan Morris; Joshua Cates; Ross T. Whitaker; Evgueni Kholmovski; Nassir Marrouche; Shireen Y. Elhabian (CinC, 2019)

Interatrial Septum and Appendage Ostium in Atrial Fibrillation Patients: A Population Study. - Anupama Goparaju; Alan Morris; Ibolya Csecs; Riddhish Bhalodia; Tom Ditter; Kristine Fuimaono; Evgueni Kholmovski; Nassir Marrouche; Joshua Cates; Shireen Y. Elhabian (CinC, 2019)

Efficient Segmentation Pipeline Using Diffeomorphic Image Registration: A Validation Study. - Shalin Parikh; Anupama Goparaju; Riddhish Bhalodia; Bosten Loveless; Alan Morris; Joshua Cates; Evgueni Kholmovski; Nassir Marrouche; Shireen Y. Elhabian (CinC, 2019)

An Image-based Approach for 3D Left Atrium Functional Measurements. - Alan Morris; Eugene G. Kholmovski; Nassir Marrouche; Joshua Cates; Shireen Y. Elhabian (CinC, 2020)