Scalable preprocessing for sparse scRNA-seq data exploiting prior knowledge. - Sumit Mukherjee; Yue Zhang 024; Joshua Fan 002; Georg Seelig; Sreeram Kannan (Bioinform., 2018)

A GNN-RNN Approach for Harnessing Geospatial and Temporal Information: Application to Crop Yield Prediction. - Joshua Fan 002; Junwen Bai; Zhiyun Li; Ariel Ortiz-Bobea; Carla P. Gomes (AAAI, 2022)

Monitoring Vegetation From Space at Extremely Fine Resolutions via Coarsely-Supervised Smooth U-Net. - Joshua Fan 002; Di Chen 001; Jiaming Wen 002; Ying Sun; Carla P. Gomes (IJCAI, 2022)

AiSciVision: A Framework for Specializing Large Multimodal Models in Scientific Image Classification. - Brendan Hogan; Anmol Kabra; Felipe Siqueira Pacheco; Laura Greenstreet; Joshua Fan 002; Aaron M. Ferber; Marta Ummus; Alecsander Brito; Olivia J. Graham; Lillian R. Aoki; Drew Harvell; Alex Flecker; et al. (CoRR, 2024)

Biogeochemistry-Informed Neural Network (BINN) for Improving Accuracy of Model Prediction and Scientific Understanding of Soil Organic Carbon. - Haodi Xu; Joshua Fan 002; Feng Tao; Lifen Jiang; Fengqi You; Benjamin Z. Houlton; Ying Sun; Carla P. Gomes; Yiqi Luo (CoRR, 2025)

Scientifically-Interpretable Reasoning Network (ScIReN): Uncovering the Black-Box of Nature. - Joshua Fan 002; Haodi Xu; Feng Tao; Md Nasim; Marc Grimson; Yiqi Luo; Carla P. Gomes (CoRR, 2025)