GeneCruiser: a web service for the annotation of microarray data. - Ted Liefeld; Michael Reich; Joshua Gould; Peili Zhang; Pablo Tamayo; Jill P. Mesirov (Bioinform., 2005)

Comparative gene marker selection suite. - Joshua Gould; Gad Getz; Stefano Monti; Michael Reich; Jill P. Mesirov (Bioinform., 2006)

GSEA-P: a desktop application for Gene Set Enrichment Analysis. - Aravind Subramanian; Heidi Kuehn; Joshua Gould; Pablo Tamayo; Jill P. Mesirov (Bioinform., 2007)

The GCTx format and cmap{Py, R, M, J} packages: resources for optimized storage and integrated traversal of annotated dense matrices. - Oana M. Enache; David L. Lahr; Ted E. Natoli; Lev Litichevskiy; David Wadden; Corey Flynn; Joshua Gould; Jacob K. Asiedu; Rajiv Narayan; Aravind Subramanian (Bioinform., 2019)