CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED. - Matthew DeJongh; Benjamin Bockstege; Paul Frybarger; Nicholas L. Hazekamp; Joshua Kammeraad; Travis McGeehan (Bioinform., 2012)

Learning To Predict Reaction Conditions: Relationships between Solvent, Molecular Structure, and Catalyst. - Eric Walker; Joshua Kammeraad; Jonathan Goetz; Michael T. Robo; Ambuj Tewari; Paul M. Zimmerman (J. Chem. Inf. Model., 2019)

TorsionNet: A Reinforcement Learning Approach to Sequential Conformer Search. - Tarun Gogineni; Ziping Xu; Exequiel Punzalan; Runxuan Jiang; Joshua Kammeraad; Ambuj Tewari; Paul M. Zimmerman (NeurIPS, 2020)

What Does the Machine Learn? Knowledge Representations of Chemical Reactivity. - Joshua Kammeraad; Jack Goetz; Eric Walker; Ambuj Tewari; Paul M. Zimmerman (J. Chem. Inf. Model., 2020)

Conformer-RL: A deep reinforcement learning library for conformer generation. - Runxuan Jiang; Tarun Gogineni; Joshua Kammeraad; Yifei He; Ambuj Tewari; Paul M. Zimmerman (J. Comput. Chem., 2022)