A practical exact maximum compatibility algorithm for reconstruction of recent evolutionary history. - Joshua L. Cherry (BMC Bioinform., 2017)

Accelerating Bayesian inference of dependency between mixed-type biological traits. - Zhenyu Zhang; Akihiko Nishimura; Nídia S. Trovão; Joshua L. Cherry; Andrew J. Holbrook; Xiang Ji; Philippe Lemey; Marc A. Suchard (PLoS Comput. Biol., 2023)