A hybrid genetic algorithm with pattern search for finding heavy atoms in protein crystals. - Joshua L. Payne; Margaret J. Eppstein (GECCO, 2005)

Emergent mating topologies in spatially structured genetic algorithms. - Joshua L. Payne; Margaret J. Eppstein (GECCO, 2006)

Takeover times on scale-free topologies. - Joshua L. Payne; Margaret J. Eppstein (GECCO, 2007)

Why your mates shouldn't date. - Joshua L. Payne; Margaret J. Eppstein (GECCO, 2007)

Using pair approximations to predict takeover dynamics in spatially structured populations. - Joshua L. Payne; Margaret J. Eppstein (GECCO (Companion), 2007)

Sensitivity of Self-Organized Speciation to Long-Disctance Dispersal. - Joshua L. Payne; Margaret J. Eppstein; Charles C. Goodnight (ALIFE, 2007)

Genomic mining for complex disease traits with "random chemistry". - Margaret J. Eppstein; Joshua L. Payne; Bill C. White; Jason H. Moore (Genet. Program. Evolvable Mach., 2007)

The influence of scaling and assortativity on takeover times in scale-free topologies. - Joshua L. Payne; Margaret J. Eppstein (GECCO, 2008)

Parameterizing pair approximations for takeover dynamics. - Joshua L. Payne; Margaret J. Eppstein (GECCO (Companion), 2008)

Pair Approximations of Takeover Dynamics in Regular Population Structures. - Joshua L. Payne; Margaret J. Eppstein (Evol. Comput., 2009)

Evolutionary Dynamics on Scale-Free Interaction Networks. - Joshua L. Payne; Margaret J. Eppstein (IEEE Trans. Evol. Comput., 2009)

Sexual Recombination in Self-Organizing Interaction Networks. - Joshua L. Payne; Jason H. Moore (EvoApplications (1), 2010)

The influence of whole genome duplication and subsequent diversification on environmental robustness and evolutionary innovation in gene regulatory networks. - Qinxin Pan; Christian Darabos; Anna L. Tyler; Jason H. Moore; Joshua L. Payne (ECAL, 2011)

Robustness, evolvability, and accessibility in the signal-integration space of gene regulatory circuits. - Joshua L. Payne; Jason H. Moore (ECAL, 2011)

Robustness, Evolvability, and Accessibility in Linear Genetic Programming. - Ting Hu 001; Joshua L. Payne; Wolfgang Banzhaf; Jason H. Moore (EuroGP, 2011)

Physical, transparent derivation of the contagion condition for spreading processes on generalized random networks - Peter Sheridan Dodds; Kameron Decker Harris; Joshua L. Payne (CoRR, 2011)

Exact solutions for social and biological contagion models on mixed directed and undirected, degree-correlated random networks - Joshua L. Payne; Kameron Decker Harris; Peter Sheridan Dodds (CoRR, 2011)

Evolutionary dynamics on multiple scales: a quantitative analysis of the interplay between genotype, phenotype, and fitness in linear genetic programming. - Ting Hu 001; Joshua L. Payne; Wolfgang Banzhaf; Jason H. Moore (Genet. Program. Evolvable Mach., 2012)

The influence of assortativity on the robustness and evolvability of gene regulatory networks upon gene birth. - Dov A. Pechenick; Jason H. Moore; Joshua L. Payne (ECAL, 2013)

An alternative route to robustness: The relationship between assortativity, in-components, and characteristic path length in gene regulatory networks. - Dov A. Pechenick; Joshua L. Payne; Jason H. Moore (ECAL, 2013)

Constraint and Contingency in Multifunctional Gene Regulatory Circuits. - Joshua L. Payne; Andreas Wagner (PLoS Comput. Biol., 2013)

Complex and dynamic population structures: synthesis, open questions, and future directions. - Joshua L. Payne; Mario Giacobini; Jason H. Moore (Soft Comput., 2013)

Robustness, Evolvability, and the Logic of Genetic Regulation. - Joshua L. Payne; Jason H. Moore; Andreas Wagner (Artif. Life, 2014)

Latent phenotypes pervade gene regulatory circuits. - Joshua L. Payne; Andreas Wagner (BMC Syst. Biol., 2014)

Phenotypic Robustness and the Assortativity Signature of Human Transcription Factor Networks. - Dov A. Pechenick; Joshua L. Payne; Jason H. Moore (PLoS Comput. Biol., 2014)

Genonets server - a web server for the construction, analysis and visualization of genotype networks. - Fahad Khalid; José Aguilar-Rodríguez; Andreas Wagner; Joshua L. Payne (Nucleic Acids Res., 2016)

Mutation bias interacts with composition bias to influence adaptive evolution. - Alejandro V. Cano; Joshua L. Payne (PLoS Comput. Biol., 2020)

On the incongruence of genotype-phenotype and fitness landscapes. - Malvika Srivastava; Joshua L. Payne (PLoS Comput. Biol., 2022)