cit: hypothesis testing software for mediation analysis in genomic applications. - Joshua Millstein; Gary K. Chen; Carrie V. Breton (Bioinform., 2016)

Partition: a surjective mapping approach for dimensionality reduction. - Joshua Millstein; Francesca Battaglin; Malcolm Barrett; Shu Cao; Wu Zhang; Sebastian Stintzing; Volker Heinemann; Heinz-Josef Lenz (Bioinform., 2020)

partition: A fast and flexible framework for data reduction in R. - Malcolm Barrett; Joshua Millstein (J. Open Source Softw., 2020)

CausNet: generational orderings based search for optimal Bayesian networks via dynamic programming with parent set constraints. - Nand Sharma; Joshua Millstein (BMC Bioinform., 2023)