A practical algorithm for finding maximal exact matches in large sequence datasets using sparse suffix arrays. - Zia Khan; Joshua S. Bloom; Leonid Kruglyak; Mona Singh 001 (Bioinform., 2009)

Protein quantification across hundreds of experimental conditions. - Zia Khan; Joshua S. Bloom; Benjamin A. Garcia; Mona Singh 001; Leonid Kruglyak (Proc. Natl. Acad. Sci. USA, 2009)

Astrophysical Applications of Machine Learning at Scale and under Duress. - Joshua S. Bloom (IPDPS, 2014)

cesium: Open-Source Platform for Time-Series Inference. - Brett Naul; Stéfan van der Walt; Arien Crellin-Quick; Joshua S. Bloom; Fernando Pérez (SciPy, 2016)

SkyPortal: An Astronomical Data Platform. - Stefan Johann van der Walt; Arien Crellin-Quick; Joshua S. Bloom (J. Open Source Softw., 2019)

deepCR: Cosmic Ray Rejection with Deep Learning. - Keming Zhang; Joshua S. Bloom (J. Open Source Softw., 2019)

Automating Inference of Binary Microlensing Events with Neural Density Estimation. - Keming Zhang; Joshua S. Bloom; B. Scott Gaudi; François Lanusse; Casey Lam; Jessica Lu (CoRR, 2020)

Classification of Periodic Variable Stars with Novel Cyclic-Permutation Invariant Neural Networks. - Keming Zhang; Joshua S. Bloom (CoRR, 2020)

Real-Time Likelihood-Free Inference of Roman Binary Microlensing Events with Amortized Neural Posterior Estimation. - Keming Zhang; Joshua S. Bloom; B. Scott Gaudi; François Lanusse; Casey Lam; Jessica Lu (CoRR, 2021)

A Ubiquitous Unifying Degeneracy in 2-body Microlensing Systems. - Keming Zhang; B. Scott Gaudi; Joshua S. Bloom (CoRR, 2021)

nbi: the Astronomer's Package for Neural Posterior Estimation. - Keming Zhang; Joshua S. Bloom; Stéfan van der Walt; Nina Hernitschek (CoRR, 2023)

Stellar Spectra Fitting with Amortized Neural Posterior Estimation and nbi. - Keming Zhang; Tharindu Jayasinghe; Joshua S. Bloom (CoRR, 2023)

AstroM3: A self-supervised multimodal model for astronomy. - Mariia Rizhko; Joshua S. Bloom (CoRR, 2024)

AstroCompress: A benchmark dataset for multi-purpose compression of astronomical data. - Tuan Truong; Rithwik Sudharsan; Yibo Yang; Peter Xiangyuan Ma; Ruihan Yang; Stephan Mandt; Joshua S. Bloom (ICLR, 2025)