Large-Scale Trends in the Evolution of Gene Structures within 11 Animal Genomes. - Mark Yandell; Chris Mungall; Chris Smith; Simon Prochnik; Joshua S. Kaminker; George Hartzell; Suzanna Lewis; Gerald M. Rubin (PLoS Comput. Biol., 2006)

CanPredict: a computational tool for predicting cancer-associated missense mutations. - Joshua S. Kaminker; Yan Zhang; Colin K. Watanabe; Zemin Zhang (Nucleic Acids Res., 2007)

ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses. - Melanie A. Huntley; Jessica L. Larson; Christina Chaivorapol; Gabriel Becker; Michael Lawrence; Jason A. Hackney; Joshua S. Kaminker (Bioinform., 2013)

MicrobiomeExplorer: an R package for the analysis and visualization of microbial communities. - Janina Reeder; Mo Huang; Joshua S. Kaminker; Joseph N. Paulson (Bioinform., 2021)