A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness. - T. J. Sego; Josua Aponte-Serrano; Juliano Ferrari Gianlupi; Samuel R. Heaps; Kira Breithaupt; Lutz Brusch; Jessica R. Crawshaw; James M. Osborne; Ellen M. Quardokus; Richard K. Plemper; James A. Glazier (PLoS Comput. Biol., 2020)

Run for Your Life - An Integrated Virtual Tissue Platform for Incorporating Exercise Oncology into Immunotherapy. - Josua Aponte-Serrano; Amit Hagar (ISMCO, 2021)

Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics. - Josua Aponte-Serrano; Jordan J. A. Weaver; T. J. Sego; James A. Glazier; Jason E. Shoemaker (PLoS Comput. Biol., 2021)