Automatic extraction of brain surface and mid-sagittal plane from PET images applying deformable models. - Jouni M. Mykkänen; Jussi Tohka; Jouni Luoma; Ulla Ruotsalainen (Comput. Methods Programs Biomed., 2005)

Multilingual is not enough: BERT for Finnish. - Antti Virtanen; Jenna Kanerva; Rami Ilo; Jouni Luoma; Juhani Luotolahti; Tapio Salakoski; Filip Ginter; Sampo Pyysalo (CoRR, 2019)

Exploring Cross-sentence Contexts for Named Entity Recognition with BERT. - Jouni Luoma; Sampo Pyysalo (COLING, 2020)

A Broad-coverage Corpus for Finnish Named Entity Recognition. - Jouni Luoma; Miika Oinonen; Maria Pyykönen; Veronika Laippala; Sampo Pyysalo (LREC, 2020)

Fine-grained Named Entity Annotation for Finnish. - Jouni Luoma; Li-Hsin Chang; Filip Ginter; Sampo Pyysalo (NoDaLiDa, 2021)

FinGPT: Large Generative Models for a Small Language. - Risto Luukkonen; Ville Komulainen; Jouni Luoma; Anni Eskelinen; Jenna Kanerva; Hanna-Mari Kupari; Filip Ginter; Veronika Laippala; Niklas Muennighoff; Aleksandra Piktus; Thomas Wang; Nouamane Tazi; et al. (EMNLP, 2023)

Overview of DrugProt task at BioCreative VII: data and methods for large-scale text mining and knowledge graph generation of heterogenous chemical-protein relations. - Antonio Miranda-Escalada; Farrokh Mehryary; Jouni Luoma; Darryl Estrada-Zavala; Luis Gascó; Sampo Pyysalo; Alfonso Valencia; Martin Krallinger (Database J. Biol. Databases Curation, 2023)

RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature. - Katerina C. Nastou; Farrokh Mehryary; Tomoko Ohta; Jouni Luoma; Sampo Pyysalo; Lars Juhl Jensen (Database J. Biol. Databases Curation, 2024)