Computational Modeling and Analysis of Iron Release from Macrophages. - Alka A. Potdar; Joydeep Sarkar; Nupur K. Das; Paroma Ghosh; Miklos Gratzl; Paul L. Fox; Gerald M. Saidel (PLoS Comput. Biol., 2014)

Whole-body iron transport and metabolism: Mechanistic, multi-scale model to improve treatment of anemia in chronic kidney disease. - Joydeep Sarkar; Alka A. Potdar; Gerald M. Saidel (PLoS Comput. Biol., 2018)

Enhancing pre-trained contextual embeddings with triplet loss as an effective fine-tuning method for extracting clinical features from electronic health record derived mental health clinical notes. - Deepali Kulkarni; Abhijit Ghosh; Amey Girdhari; Shaomin Liu; L. Alexander Vance; Melissa Unruh; Joydeep Sarkar (Nat. Lang. Process. J., 2024)

3D convolutional neural networks uncover modality-specific brain-imaging predictors for Alzheimer's disease sub-scores. - Kaida Ning; Pascale B. Cannon; Jiawei Yu; Srinesh Shenoi; Lu Wang; Joydeep Sarkar (Brain Informatics, 2024)

Natural language processing to identify suicidal ideation and anhedonia in major depressive disorder. - L. Alexander Vance; Leslie Way; Deepali Kulkarni; Emily O. C. Palmer; Abhijit Ghosh; Melissa Unruh; Kelly M. Y. Chan; Amey Girdhari; Joydeep Sarkar (BMC Medical Informatics Decis. Mak., 2025)