CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics. - Xiaowu Gai; Juan C. Perin; Kevin Murphy 005; Ryan O'Hara; Monica D'arcy; Adam Wenocur; Hongbo M. Xie; Eric F. Rappaport; Tamim H. Shaikh; Peter S. White (BMC Bioinform., 2010)

Mitochondrial Genome Sequence Analysis: A custom bioinformatics pipeline substantially improves Affymetrix MitoChip v2.0 call rate and accuracy. - Hongbo M. Xie; Juan C. Perin; Theodore G. Schurr; Matthew C. Dulik; Sergey I. Zhadanov; Joseph A. Baur; Michael P. King; Emily Place; Colleen Clarke; Michael Grauer; Jonathan Schug; Avni Santani; et al. (BMC Bioinform., 2011)

Bamchop: A bioinformatics utility to summarize and visualize exome and other types of targeted resequencing data. - Zhe Zhang; Jeremy Leipzig; Ariella Sasson; Juan Carlos Perin; Michael Xie; Mahdi Sarmady; Patrick V. Warren; Peter S. White (BIBM Workshops, 2012)

Efficient digest of high-throughput sequencing data in a reproducible report. - Zhe Zhang; Jeremy Leipzig; Ariella Sasson; Angela M. Yu; Juan C. Perin; Hongbo M. Xie; Mahdi Sarmady; Patrick V. Warren; Peter S. White (BMC Bioinform., 2013)

Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center. - Peter J. Schüffler; Luke Geneslaw; Dig Vijay Kumar Yarlagadda; Matthew G. Hanna; Jennifer Samboy; Evangelos Stamelos; Chad M. Vanderbilt; John Philip; Marc-Henri Jean; Lorraine Corsale; Allyne Manzo; Neeraj H. G. Paramasivam; et al. (J. Am. Medical Informatics Assoc., 2021)