Compartimentation in Replicator Models. - Juan Carlos Nuño; Pablo Chacón; Alvaro Moreno; Federico Morán (ECAL, 1995)

A structural approach to the analysis of metabolic networks illustrated with erythrocyte metabolism. - Ignacio Sánchez-Valdenebro; Thomas Pfeiffer 004; Juan Carlos Nuño; Francisco Montero 002; Stefan Schuster (German Conference on Bioinformatics, 1998)

Analyzing Large enzymatic reaction networks. - Thomas Pfeiffer 004; Juan Carlos Nuño; Francisco Montero 002; Stefan Schuster (German Conference on Bioinformatics, 1999)

METATOOL: for studying metabolic networks. - Thomas Pfeiffer 004; Ignacio Sánchez-Valdenebro; Juan Carlos Nuño; Francisco Montero 002; Stefan Schuster (Bioinform., 1999)

Evolutionary Daisyworld models: A new approach to studying complex adaptive systems. - Juan Carlos Nuño; Javier de Vicente; José Olarrea; Pilar López; Rafael Lahoz-Beltra (Ecol. Informatics, 2010)

Enabling stable coexistence by modifying the environment. - Alejandro Pastor; Juan Carlos Nuño; José Olarrea; Javier de Vicente (Appl. Math. Comput., 2020)

Machine learning for risk assessment in gender-based crime. - Ángel González-Prieto; Antonio Brú; Juan Carlos Nuño; José Luis González-Álvarez (CoRR, 2021)

Entropy-Variance Curves of Binary Sequences Generated by Random Substitutions of Constant Length. - Juan Carlos Nuño; Francisco J. Muñoz (Entropy, 2022)

Hybrid machine learning methods for risk assessment in gender-based crime. - Ángel González-Prieto; Antonio Brú; Juan Carlos Nuño; José Luis González-Álvarez (Knowl. Based Syst., 2023)

Exploring the limits of the law of mass action in the mean field description of epidemics on Erdös-Rényi networks. - Francisco J. Muñoz; Luca Meacci; Juan Carlos Nuño; Mario Primicerio (Appl. Math. Comput., 2025)

Rule-based Generation of de Bruijn Sequences: Memory and Learning. - Francisco J. Muñoz; Juan Carlos Nuño (CoRR, 2025)