Segmentation of the pulmonary vascular tree. - Juan-Carlos Prieto 001; Chantal Revol-Muller; Christophe Odet; Maciej Orkisz; Carolina Perez Romanello; Vanessa Perez Romanello; Marcela Hernández Hoyos (CLEI, 2012)

3D Texture Synthesis for Modeling Realistic Organic Tissues. - Juan-Carlos Prieto 001; Chantal Revol-Muller; Françoise Peyrin; Patrizia Camelliti; Christophe Odet (VISAPP (2), 2012)

Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: the VESSEL12 study. - Rina Dewi Rudyanto; Sjoerd Kerkstra; Eva M. van Rikxoort; Catalin I. Fetita; Pierre-Yves Brillet; Christophe Lefevre; Wenzhe Xue; Xiangjun Zhu; Jianming Liang; Ilkay Öksüz; Devrim Ünay; Kamuran Kadipasaoglu; et al. (Medical Image Anal., 2014)

Skeletal shape correspondence via entropy minimization. - Liyun Tu; Martin Styner; Jared Vicory; Beatriz Paniagua; Juan-Carlos Prieto 001; Dan Yang 001; Stephen M. Pizer (Image Processing, 2015)

Autotract: automatic cleaning and tracking of fibers. - Juan-Carlos Prieto 001; Jean Y. Yang; François Budin; Martin Styner (Image Processing, 2016)

Entropy-based correspondence improvement of interpolated skeletal models. - Liyun Tu; Jared Vicory; Shireen Y. Elhabian; Beatriz Paniagua; Juan-Carlos Prieto 001; James N. Damon; Ross T. Whitaker; Martin Styner; Stephen M. Pizer (Comput. Vis. Image Underst., 2016)

FADTTSter: accelerating hypothesis testing with functional analysis of diffusion tensor tract statistics. - Jean Noel; Juan-Carlos Prieto 001; Martin Styner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

Diagnostic index: an open-source tool to classify TMJ OA condyles. - Beatriz Paniagua; Laura Pascal; Juan Prieto 001; Jean-Baptiste Vimort; Liliane R. Gomes; Marilia Yatabe; Antonio Carlos Ruellas; François Budin; Steve Pieper 001; Martin Styner; Erika Benavides; Lucia H. S. Cevidanes (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

Federating heterogeneous datasets to enhance data sharing and experiment reproducibility. - Juan-Carlos Prieto 001; Beatriz Paniagua; Marilia S. Yatabe; Antonio C. O. Ruellas; Liana Fattori; Luciana Muniz; Martin Styner; Lucia H. S. Cevidanes (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

CIVILITY: cloud based interactive visualization of tractography brain connectome. - Danaële Puechmaille; Martin Styner; Juan-Carlos Prieto 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2017)

White matter fiber-based analysis of T1w/T2w ratio map. - Haiwei Chen; François Budin; Jean Noel; Juan-Carlos Prieto 001; John H. Gilmore; Jerod Rasmussen; Pathik D. Wadhwa; Sonja Entringer; Claudia Buss; Martin Styner (Image Processing, 2017)

Large deep neural networks for MS lesion segmentation. - Juan-Carlos Prieto 001; Michele Cavallari; Miklos Palotai; Alfredo Morales Pinzón; Svetlana Egorova; Martin Styner; Charles R. G. Guttmann (Image Processing, 2017)

SVA: shape variation analyzer. - Priscille de Dumast; Clément Mirabel; Beatriz Paniagua; Marilia Yatabe; Antonio C. Ruellas; Nina Tubau; Martin Styner; Lucia H. S. Cevidanes; Juan-Carlos Prieto 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

SlicerSALT: Shape AnaLysis Toolbox. - Jared Vicory; Laura Pascal; Pablo Hernandez; James Fishbaugh; Juan-Carlos Prieto 001; Mahmoud Mostapha; Chao Huang 005; Hina Shah; Jun-Pyo Hong; Zhiyuan Liu 012; Loic Michoud; Jean-Christophe Fillion-Robin; et al. (ShapeMI@MICCAI, 2018)

TRAFIC: fiber tract classification using deep learning. - Prince D. Ngattai Lam; Gaetan Belhomme; Jessica Ferrall; Billie Patterson; Martin Styner; Juan-Carlos Prieto 001 (Image Processing, 2018)

A web-based system for neural network based classification in temporomandibular joint osteoarthritis. - Priscille de Dumast; Clément Mirabel; Lucia H. S. Cevidanes; Antonio C. Ruellas; Marilia Yatabe; Marcos Ioshida; Nina Tubau Ribera; Loic Michoud; Liliane R. Gomes; Chao Huang 005; Hongtu Zhu; Luciana Muniz; et al. (Comput. Medical Imaging Graph., 2018)

Skeletal Shape Correspondence Through Entropy. - Liyun Tu; Martin Styner; Jared Vicory; Shireen Y. Elhabian; Rui Wang 071; Jun-Pyo Hong; Beatriz Paniagua; Juan-Carlos Prieto 001; Dan Yang 001; Ross T. Whitaker; Stephen M. Pizer (IEEE Trans. Medical Imaging, 2018)

Conformal initialization for shape analysis applications in SlicerSALT. - Zhengyang Fang; Mahmoud Mostapha; Juan Prieto 001; Martin Styner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

A web-based system for statistical shape analysis in temporomandibular joint osteoarthritis. - Loic Michoud; Chao Huang 005; Marilia Yatabe; Antonio Carlos Ruellas; Marcos Ioshida; Beatriz Paniagua; Martin Styner; João Roberto Gonçalves; Jonas Bianchi; Lucia H. S. Cevidanes; Juan-Carlos Prieto 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Multiseg pipeline: automatic tissue segmentation of brain MR images with subject-specific atlases. - Kevin Pham; Xiao Yang 002; Marc Niethammer; Juan-Carlos Prieto 001; Martin Styner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Shape variation analyzer: a classifier for temporomandibular joint damaged by osteoarthritis. - Nina Tubau Ribera; Priscille de Dumast; Marilia Yatabe; Antonio C. Ruellas; Marcos Ioshida; Beatriz Paniagua; Martin Styner; João Roberto Gonçalves; Jonas Bianchi; Lucia H. S. Cevidanes; Juan-Carlos Prieto 001 (Computer-Aided Diagnosis, 2019)

Semi-supervised VAE-GAN for Out-of-Sample Detection Applied to MRI Quality Control. - Mahmoud Mostapha; Juan Prieto 001; Veronica Murphy; Jessica B. Girault; Mark Foster; Ashley Rumple; Joseph Blocher; Weili Lin; Jed T. Elison; John H. Gilmore; Steven M. Pizer; Martin Styner (MICCAI (3), 2019)

White matter connectomes at birth accurately predict cognitive abilities at age 2. - Jessica B. Girault; Brent C. Munsell; Danaële Puechmaille; Barbara Davis Goldman; Juan-Carlos Prieto 001; Martin Styner; John H. Gilmore (NeuroImage, 2019)

3D Auto-Segmentation of Mandibular Condyles. - Serge Brosset; Maxime Dumont; Jonas Bianchi; Antonio C. Ruellas; Lucia H. S. Cevidanes; Marilia Yatabe; João Roberto Gonçalves; Erika Benavides; Fabiana Soki; Beatriz Paniagua; Juan Prieto 001; Kayvan Najarian; et al. (EMBC, 2020)

Automatic measurement of extra-axial CSF from infant MRI data. - Arthur Le Maout; Han Bit Yoon; Sun Hyung Kim; Mahmoud Mostapha; Mark D. Shen; Juan-Carlos Prieto 001; Martin Styner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2020)

Patient Specific Classification of Dental Root Canal and Crown Shape. - Maxime Dumont; Juan-Carlos Prieto 001; Serge Brosset; Lucia H. S. Cevidanes; Jonas Bianchi; Antonio C. Ruellas; Marcela Gurgel; Camila Massaro; Aron Aliaga Del Castillo; Marcos Ioshida; Marilia Yatabe; Erika Benavides; et al. (ShapeMI@MICCAI, 2020)

Multi-modal Perceptual Adversarial Learning for Longitudinal Prediction of Infant MR Images. - Liying Peng; Lanfen Lin; Yusen Lin; Yue Zhang 042; Roza M. Vlasova; Juan Prieto 001; Yen-Wei Chen 001; Guido Gerig; Martin Styner (ASMUS/PIPPI@MICCAI, 2020)

TMJOAI: An Artificial Web-Based Intelligence Tool for Early Diagnosis of the Temporomandibular Joint Osteoarthritis. - Celia Le; Romain Deleat-Besson; Najla Al Turkestani; Lucia H. S. Cevidanes; Jonas Bianchi; Winston Zhang; Marcela Gurgel; Hina Shah; Juan Prieto 001; Tengfei Li 001 (CLIP/DCL/LL-COVID19/PPML@MICCAI, 2021)

Automatic Segmentation of Dental Root Canal and Merging with Crown Shape. - Romain Deleat-Besson; Celia Le; Najla Al Turkestani; Winston Zhang; Maxime Dumont; Serge Brosset; Juan Carlos Prieto 001; Lucia H. S. Cevidanes; Jonas Bianchi; Antonio C. Ruellas; Marcela Gurgel; Camila Massaro; et al. (EMBC, 2021)

Automatic Segmentation of Mandibular Ramus and Condyles. - Celia Le; Romain Deleat-Besson; Juan Carlos Prieto 001; Serge Brosset; Maxime Dumont; Winston Zhang; Lucia H. S. Cevidanes; Jonas Bianchi; Antonio C. Ruellas; Liliane R. Gomes; Marcela Gurgel; Camila Massaro; et al. (EMBC, 2021)

Temporomandibular Joint Osteoarthritis Diagnosis Using Privileged Learning of Protein Markers. - Winston Zhang; Jonas Bianchi; Najla Al Turkestani; Celia Le; Romain Deleat-Besson; Antonio C. Ruellas; Lucia H. S. Cevidanes; Marilia Yatabe; João Roberto Gonçalves; Erika Benavides; Fabiana Soki; Juan Prieto 001; et al. (EMBC, 2021)

Web infrastructure for data management, storage and computation. - Serge Brosset; Maxime Dumont; Lucia H. S. Cevidanes; Reza Soroushmehr; Jonas Bianchi; Marcela Lima Gurgel; Romain Deleat-Besson; Celia Le; Antonio C. Ruellas; Marilia Yatabe; Liliane R. Gomes; João Roberto Gonçalves; et al. (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2021)

Merging and Annotating Teeth and Roots from Automated Segmentation of Multimodal Images. - Romain Deleat-Besson; Celia Le; Winston Zhang; Najla Al Turkestani; Lucia H. S. Cevidanes; Jonas Bianchi; Antonio C. Ruellas; Marcela Gurgel; Camila Massaro; Aron Aliaga Del Castillo; Marcos Ioshida; Marilia Yatabe; et al. (ML-CDS@MICCAI, 2021)

Feature Selection for Privileged Modalities in Disease Classification. - Winston Zhang; Najla Al Turkestani; Jonas Bianchi; Celia Le; Romain Deleat-Besson; Antonio C. Ruellas; Lucia H. S. Cevidanes; Marilia Yatabe; João Roberto Gonçalves; Erika Benavides; Fabiana Soki; Juan Prieto 001; et al. (ML-CDS@MICCAI, 2021)

Image Sequence Generation and Analysis via GRU and Attention for Trachomatous Trichiasis Classification. - Juan-Carlos Prieto 001; Hina Shah; Kasey Jones; Robert F. Chew; Hashiya M. Kana; Jerusha Weaver; Rebecca M. Flueckiger; Scott McPherson; Emily W. Gower (MIDL, 2021)

FlyBy CNN: a 3D surface segmentation framework. - Louis Boubolo; Maxime Dumont; Serge Brosset; Jonas Bianchi; Antonio C. Ruellas; Marcela Gurgel; Camila Massaro; Aron Aliaga Del Castillo; Marcos Ioshida; Marilia Yatabe; Erika Benavides; Hector Rios; et al. (Image Processing, 2021)

An automated framework for image classification and segmentation of fetal ultrasound images for gestational age estimation. - Juan Carlos Prieto 001; Hina Shah; Alan J. Rosenbaum; Xiaoning Jiang; Patrick Musonda; Joan T. Price; Elizabeth M. Stringer; Bellington Vwalika; David M. Stamilio; Jeffrey S. A. Stringer (Image Processing, 2021)

Local extraction of extra-axial CSF from structural MRI. - Tahya Deddah; Martin Styner; Juan Prieto 001 (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

CONTINUITY: CONnectivity Tool with INtegration of sUbcortical regions, regIstration and visualization of TractographY. - Elodie Piot; Maria Bagonis; Guorong Wu 001; Juan Prieto 001; Martin Styner (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2022)

Automatic Landmark Identification on IntraOralScans. - Baptiste Baquero; Maxime Gillot; Lucia H. S. Cevidanes; Najla Al Turkestani; Marcela Gurgel; Mathieu Leclercq; Jonas Bianchi; Marilia Yatabe; Antonio C. Ruellas; Camila Massaro; Aron Aliaga Del Castillo; Maria Antonia Alvarez Castrillon; et al. (CLIP@MICCAI, 2022)

Multi-view Attention for gestational age at birth prediction. - Mathieu Leclercq; Martin Styner; Juan Carlos Prieto 001 (CoRR, 2022)

Automated Orientation and Registration of Cone-Beam Computed Tomography Scans. - Luc Anchling; Nathan Hutin; Yanjie Huang; Selene Barone; Sophie Roberts; Felicia Miranda; Marcela Gurgel; Najla Al Turkestani; Sara Tinawi; Jonas Bianchi; Marilia Yatabe; Antonio C. Ruellas; et al. (CLIP/FAIMI/EPIMI@MICCAI, 2023)

Dentalmodelseg: Fully Automated Segmentation of Upper and Lower 3D Intra-Oral Surfaces. - Mathieu Leclercq; Antonio C. Ruellas; Marcela Gurgel; Marilia Yatabe; Jonas Bianchi; Lucia H. S. Cevidanes; Martin Styner; Beatriz Paniagua; Juan Carlos Prieto 001 (ISBI, 2023)

AReg IOS: Automatic Registration on IntraOralScans. - Nathan Hutin; Luc Anchling; Lucia H. S. Cevidanes; Felicia Miranda; Denise Curado; Marcela Gurgel; Selene Barone; Jonas Bianchi; Najla Al Turkestani; Antonio C. Ruellas; Margaret Eason; Kinjal Mavani; et al. (ShapeMI@MICCAI, 2023)

SimNorth: A Novel Contrastive Learning Approach for Clustering Prenatal Ultrasound Images. - Juan Carlos Prieto 001; Chiraz BenAbdelkader; Teeranan Pokaprakarn; Hina Shah; Yuri Sebastião; Qing Dan; Nariman Almnini; Arieska Nicole Diaz; Srihari Chari; Harmony Chi; Elizabeth M. Stringer; Jeffrey S. A. Stringer (ASMUS@MICCAI, 2023)

IcoConv: Explainable Brain Cortical Surface Analysis for ASD Classification. - Ugo Rodriguez; Juan-Carlos Prieto 001; Martin Styner (ShapeMI@MICCAI, 2023)

SlicerSALT: From Medical Images to Quantitative Insights of Anatomy. - Jared Vicory; Ye Han; Juan Carlos Prieto 001; David Allemang; Mathieu Leclercq; Connor Bowley; Harald Scheirich; Jean-Christophe Fillion-Robin; Stephen M. Pizer; James Fishbaugh; Guido Gerig; Martin Styner; et al. (ShapeMI@MICCAI, 2023)

Dmriprep: open-source diffusion MRI quality control framework with graphical user interface. - Johanna Dubos; Sang Kyoon Park; Roza M. Vlasova; Juan Prieto 001; Martin Styner (Image Processing, 2023)

3DTeethSeg'22: 3D Teeth Scan Segmentation and Labeling Challenge. - Achraf Ben-Hamadou; Oussama Smaoui; Ahmed Rekik; Sergi Pujades; Edmond Boyer; Hoyeon Lim; Minchang Kim; Minkyung Lee; Minyoung Chung; Yeong-Gil Shin; Mathieu Leclercq; Lucia H. S. Cevidanes; et al. (CoRR, 2023)

Novel CBCT-MRI Registration Approach for Enhanced Analysis of Temporomandibular Degenerative Joint Disease. - Gaëlle Leroux; Claudia Mattos; Jeanne Claret; Eduardo Caleme; Selene Barone; Marcela Gurgel; Felicia Miranda; Joao Goncalves; Paulo Zupelari Goncalves; Marina Morettin-Zupelari; Larry Wolford; Nina Hsu; et al. (CLIP@MICCAI, 2024)