Segmentation of subcortical brain structures using fuzzy templates. - Juan Helen Zhou; Jagath C. Rajapakse (NeuroImage, 2005)

Modeling hemodynamic variability with fuzzy features for detecting brain activation from fMR time-series. - Juan Helen Zhou; Jagath C. Rajapakse (Neural Comput. Appl., 2007)

Learning effective brain connectivity with dynamic Bayesian networks. - Jagath C. Rajapakse; Juan Helen Zhou (NeuroImage, 2007)

Fuzzy approach to incorporate hemodynamic variability and contextual information for detection of brain activation. - Juan Helen Zhou; Jagath C. Rajapakse (Neurocomputing, 2008)

Probabilistic Framework for Brain Connectivity From Functional MR Images. - Jagath C. Rajapakse; Yang Wang 002; Xuebin Zheng; Juan Helen Zhou (IEEE Trans. Medical Imaging, 2008)

Modelling the variability of brain structures, activation, and connectivity - Juan Helen Zhou (2008)

One-year test-retest reliability of intrinsic connectivity network fMRI in older adults. - Christine Cong Guo; Florian Kurth; Juan Helen Zhou; Emeran A. Mayer; Simon B. Eickhoff; Joel H. Kramer; William W. Seeley (NeuroImage, 2012)

Design of hardware efficient modulated filter bank for EEG signals feature extraction. - Jiajia Chen 002; Weiao Ding; Juan Helen Zhou (MWSCAS, 2014)

Differential age-dependent associations of gray matter volume and white matter integrity with processing speed in healthy older adults. - Zhaoping Hong; Kwun Kei Ng; Sam K. Y. Sim; Mei Yi Ngeow; Hui Zheng; June C. Lo; Michael W. L. Chee; Juan Helen Zhou (NeuroImage, 2015)

Reduced functional segregation between the default mode network and the executive control network in healthy older adults: A longitudinal study. - Kwun Kei Ng; June C. Lo; Joseph K. W. Lim; Michael W. L. Chee; Juan Helen Zhou (NeuroImage, 2016)

Longitudinal brain structure and cognitive changes over 8 years in an East Asian cohort. - Ruth L. F. Leong; June C. Lo; Sam K. Y. Sim; Hui Zheng; Jesisca Tandi; Juan Helen Zhou; Michael W. L. Chee (NeuroImage, 2017)

Interpreting temporal fluctuations in resting-state functional connectivity MRI. - Raphaël Liégeois; Timothy O. Laumann; Abraham Z. Snyder; Juan Helen Zhou; B. T. Thomas Yeo (NeuroImage, 2017)

Differential Amplitude of Low-Frequency Fluctuations in brain networks after BCI Training with and without tDCS in Stroke. - Mengjiao Hu; Fang Ji; Zhongkang Lu; Weimin Huang 002; Reza Khosrowabadi; Ling Zhao 007; Kai Keng Ang; Kok Soon Phua; Fatima Ali Nasrallah; Kai-Hsiang Chuang; Mary C. Stephenson; John J. Totman; et al. (EMBC, 2018)

Carrying the past to the future: Distinct brain networks underlie individual differences in human spatial working memory capacity. - Siwei Liu 006; Jia-Hou Poh; Hui Li Koh; Kwun Kei Ng; Yng Miin Loke; Joseph K. W. Lim; Joanna Su Xian Chong; Juan Helen Zhou (NeuroImage, 2018)

Dynamic functional connectivity and its behavioral correlates beyond vigilance. - Amiya Patanaik; Jesisca Tandi; Ju Lynn Ong; Chenhao Wang; Juan Helen Zhou; Michael W. L. Chee (NeuroImage, 2018)

Individual-specific fMRI-Subspaces improve functional connectivity prediction of behavior. - Rajan Kashyap; Ru Kong; Sagarika Bhattacharjee; Jingwei Li 003; Juan Helen Zhou; B. T. Thomas Yeo (NeuroImage, 2019)

Vigilance declines following sleep deprivation are associated with two previously identified dynamic connectivity states. - James Teng; Ju Lynn Ong; Amiya Patanaik; Jesisca Tandi; Juan Helen Zhou; Michael W. L. Chee; Julian Lim (NeuroImage, 2019)

BCI Facilitates the Improvement of Cognitive Functions in Children and Elderly. - Cuntai Guan; Choon Guan Lim; Daniel Fung; Juan Helen Zhou; Ranga Krishnan; Tih Shih Lee (BCI, 2020)

Brain MRI-based 3D Convolutional Neural Networks for Classification of Schizophrenia and Controls. - Mengjiao Hu; Kang Sim; Juan Helen Zhou; Xudong Jiang 001; Cuntai Guan (EMBC, 2020)

Minimizing Hybrid Dice Loss for Highly Imbalanced 3D Neuroimage Segmentation. - Yuhao Lu; Juan Helen Zhou; Cuntai Guan (EMBC, 2020)

Respiratory, cardiac, EEG, BOLD signals and functional connectivity over multiple microsleep episodes. - Chun Siong Soon; Ksenia Vinogradova; Ju Lynn Ong; Vince D. Calhoun; Thomas Liu; Juan Helen Zhou; Kwun Kei Ng; Michael W. L. Chee (NeuroImage, 2021)

COOP-DHGNN: a Framework for Joint Classification and Prediction of Brain Functional Connectivity Using Sparse Trajectory Dataset with Application to Early Dementia. - Zijian Dong 001; Joanna Su Xian Chong; Bing Cai Kok; Juan Helen Zhou (IEEE Big Data, 2022)

Decomposing 3D Neuroimaging into 2+1D Processing for Schizophrenia Recognition. - Mengjiao Hu; Xudong Jiang 001; Kang Sim; Juan Helen Zhou; Cuntai Guan (CoRR, 2022)

Goal-specific brain MRI harmonization. - Lijun An; Jianzhong Chen; Pansheng Chen; Chen Zhang; Tong He; Christopher Li Hsian Chen; Juan Helen Zhou; B. T. Thomas Yeo (NeuroImage, 2022)

Comparison of individualized behavioral predictions across anatomical, diffusion and functional connectivity MRI. - Leon Qi Rong Ooi; Jianzhong Chen; Shaoshi Zhang; Ru Kong; Angela Tam; Jingwei Li 003; Elvisha Dhamala; Juan Helen Zhou; Avram J. Holmes; B. T. Thomas Yeo (NeuroImage, 2022)

Seeing Beyond the Brain: Conditional Diffusion Model with Sparse Masked Modeling for Vision Decoding. - Zijiao Chen; Jiaxin Qing; Tiange Xiang; Wan Lin Yue; Juan Helen Zhou (CVPR, 2023)

Beyond the Snapshot: Brain Tokenized Graph Transformer for Longitudinal Brain Functional Connectome Embedding. - Zijian Dong 001; Yilei Wu; Yu Xiao; Joanna Su Xian Chong; Yueming Jin; Juan Helen Zhou (MICCAI (5), 2023)

Cinematic Mindscapes: High-quality Video Reconstruction from Brain Activity. - Zijiao Chen; Jiaxin Qing; Juan Helen Zhou (NeurIPS, 2023)

Mixup Your Own Pairs. - Yilei Wu; Zijian Dong 001; Chongyao Chen; Wangchunshu Zhou; Juan Helen Zhou (CoRR, 2023)

Naturalistic viewing increases individual identifiability based on connectivity within functional brain networks. - Jean-Philippe Kröll; Patrick Friedrich; Xuan Li; Kaustubh R. Patil; Lisa Mochalski; Laura K. Waite; Xing Qian; Michael W. L. Chee; Juan Helen Zhou; Simon B. Eickhoff; Susanne Weis (NeuroImage, 2023)

Homotopic local-global parcellation of the human cerebral cortex from resting-state functional connectivity. - Xiaoxuan Yan; Ru Kong; Aihuiping Xue; Qing Yang; Csaba Orban; Lijun An; Avram J. Holmes; Xing Qian; Jianzhong Chen; Xi-Nian Zuo; Juan Helen Zhou; Marielle V. Fortier; et al. (NeuroImage, 2023)

Prompt Your Brain: Scaffold Prompt Tuning for Efficient Adaptation of fMRI Pre-trained Model. - Zijian Dong 001; Yilei Wu; Zijiao Chen; Yichi Zhang; Yueming Jin; Juan Helen Zhou (MICCAI (11), 2024)

Brain-JEPA: Brain Dynamics Foundation Model with Gradient Positioning and Spatiotemporal Masking. - Zijian Dong 001; Ruilin Li 001; Yilei Wu; Thuan Tinh Nguyen; Joanna Su Xian Chong; Fang Ji; Nathanael Ren Jie Tong; Christopher Li Hsian Chen; Juan Helen Zhou (NeurIPS, 2024)

Improve Representation for Imbalanced Regression through Geometric Constraints. - Zijian Dong 001; Yilei Wu; Chongyao Chen; Yingtian Zou; Yichi Zhang; Juan Helen Zhou (CVPR, 2025)

DeepResBat: Deep residual batch harmonization accounting for covariate distribution differences. - Lijun An; Chen Zhang; Naren Wulan; Shaoshi Zhang; Pansheng Chen; Fang Ji; Kwun Kei Ng; Christopher Li Hsian Chen; Juan Helen Zhou; B. T. Thomas Yeo (Medical Image Anal., 2025)

Is an Ultra Large Natural Image-Based Foundation Model Superior to a Retina-Specific Model for Detecting Ocular and Systemic Diseases? - Qingshan Hou; Yukun Zhou; Jocelyn Hui Lin Goh; Ke Zou; Samantha Min Er Yew; Sahana Srinivasan; Meng Wang 001; Thaddaeus Wai Soon Lo; Xiaofeng Lei; Siegfried K. Wagner; Mark A. Chia; Dawei Yang; et al. (CoRR, 2025)