QSAR and conformational analysis of the antiinflammatory agent amfenac and analogues. - Juan Ruiz; Manuel López; Josefa Milà; Estrella Lozoya; Juan José Lozano; Ramon Pouplana (J. Comput. Aided Mol. Des., 1993)

Three-dimensional modelling of human cytochrome P450 1A2 and its interaction with caffeine and MeIQ. - Juan José Lozano; Elena López-de-Briñas; Nuria B. Centeno; Roderic Guigó; Ferran Sanz (J. Comput. Aided Mol. Des., 1997)

The structural and electronical factors that contribute affinity for the time-dependent inhibition of PGHS-1 by indomethacin, diclofenac and fenamates. - Ramon Pouplana; C. Pérez; J. Sánchez; Juan José Lozano; P. Puig-Parellada (J. Comput. Aided Mol. Des., 1999)

MIPSIM: similarity analysis of molecular interaction potentials. - Miquel de Cáceres; Jordi Villá; Juan José Lozano; Ferran Sanz (Bioinform., 2000)

3D-QSAR methods on the basis of ligand-receptor complexes. Application of COMBINE and GRID/GOLPE methodologies to a series of CYP1A2 ligands. - Juan José Lozano; Manuel Pastor; Gabriele Cruciani; Katrin Gaedt; Nuria B. Centeno; Federico Gago; Ferran Sanz (J. Comput. Aided Mol. Des., 2000)

Structure-based QSAR study on differential inhibition of human prostaglandin endoperoxide H synthase-2 (COX-2) by nonsteroidal anti-inflammatory drugs. - Ramon Pouplana; Juan José Lozano; C. Pérez; J. Ruiz (J. Comput. Aided Mol. Des., 2002)

AMarge: Automated Extensive Quality Assessment of Affymetrix Chips. - Juan José Lozano; Susana G. Kalko (Spanish Bioinformatics Conference, 2004)

Mutational Signatures in Cancer (MuSiCa): a web application to implement mutational signatures analysis in cancer samples. - Marcos Díaz-Gay; Maria Vila-Casadesús; Sebastià Franch-Expósito; Eva Hernández-Illán; Juan José Lozano; Sergi Castellví-Bel (BMC Bioinform., 2018)

experDesign: stratifying samples into batches with minimal bias. - Lluís Sancho; Juan José Lozano; Azucena Salas (J. Open Source Softw., 2021)