Predicting Intelligence Based on Cortical WM/GM Contrast, Cortical Thickness and Volumetry. - Juan Miguel Valverde; Vandad Imani; John D. Lewis; Jussi Tohka (ABCD-NP@MICCAI, 2019)

Automatic Rodent Brain MRI Lesion Segmentation with Fully Convolutional Networks. - Juan Miguel Valverde; Artem Shatillo; Riccardo de Feo; Olli Gröhn; Alejandra Sierra; Jussi Tohka (MLMI@MICCAI, 2019)

RatLesNetv2: A Fully Convolutional Network for Rodent Brain Lesion Segmentation. - Juan Miguel Valverde; Artem Shatillo; Riccardo de Feo; Olli Gröhn; Alejandra Sierra; Jussi Tohka (CoRR, 2020)

Automatic hemisphere segmentation in rodent MRI with lesions. - Juan Miguel Valverde; Artem Shatillo; Riccardo de Feo; Jussi Tohka (CoRR, 2021)

Transfer Learning in Magnetic Resonance Brain Imaging: A Systematic Review. - Juan Miguel Valverde; Vandad Imani; Ali Abdollahzadeh; Riccardo de Feo; Mithilesh Prakash; Robert Ciszek; Jussi Tohka (J. Imaging, 2021)

Automated joint skull-stripping and segmentation with Multi-Task U-Net in large mouse brain MRI databases. - Riccardo de Feo; Artem Shatillo; Alejandra Sierra; Juan Miguel Valverde; Olli Gröhn; Federico Giove; Jussi Tohka (NeuroImage, 2021)

Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks. - Juan Miguel Valverde; Artem Shatillo; Riccardo de Feo; Jussi Tohka (Neuroinformatics, 2023)

Region-wise loss for biomedical image segmentation. - Juan Miguel Valverde; Jussi Tohka (Pattern Recognit., 2023)

Sauron U-Net: Simple automated redundancy elimination in medical image segmentation via filter pruning. - Juan Miguel Valverde; Artem Shatillo; Jussi Tohka (Neurocomputing, 2024)

TopoMortar: A dataset to evaluate image segmentation methods focused on topology accuracy. - Juan Miguel Valverde; Motoya Koga; Nijihiko Otsuka; Anders Bjorholm Dahl (CoRR, 2025)

Disconnect to Connect: A Data Augmentation Method for Improving Topology Accuracy in Image Segmentation. - Juan Miguel Valverde; Maja Østergaard; Adrian Rodriguez-Palomo; Peter Alling Strange Vibe; Nina Kølln Wittig; Henrik Birkedal; Anders Bjorholm Dahl (CoRR, 2025)