A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory. - Juan Nogales; Bernhard Ø. Palsson; Ines Thiele (BMC Syst. Biol., 2008)

A dynamic model of the phosphate response system with synthetic promoters in Escherichia coli. - Cansu Uluseker; Jesus Torres; José Luis García lópez; Martin M. Hanczyc; Juan Nogales; Ozan Kahramanogullari (ECAL, 2017)

FLYCOP: metabolic modeling-based analysis and engineering microbial communities. - Beatriz García Jiménez; José Luis García lópez; Juan Nogales (Bioinform., 2018)

Providing new insights on the biphasic lifestyle of the predatory bacterium Bdellovibrio bacteriovorus through genome-scale metabolic modeling. - Cristina Herencias; Sergio Salgado-Briegas; M. Auxiliadora Prieto; Juan Nogales (PLoS Comput. Biol., 2020)

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes. - Esteban Martínez-García; Sofía Fraile; Elena Algar; Tomás Aparicio; Elena Velázquez; Belén Calles; Huseyin Tas; Blas Blázquez; Bruno Martín; Clara Prieto; Lucas Sánchez-Sampedro; Morten h H. Nørholm; et al. (Nucleic Acids Res., 2023)