Integrative Array Analyzer: a software package for analysis of cross-platform and cross-species microarray data. - Fei Pan; Kiran Kamath; Kangyu Zhang; Sudip Pulapura; Avinash Achar; Juan Nunez-Iglesias; Yu Huang 003; Xifeng Yan; Jiawei Han 001; Haiyan Hu; Min Xu; Jianjun Hu; et al. (Bioinform., 2006)

Characterizing Disease-specific Pathways and Their Coordination by Integrative Microarray Analysis with Application to Cancer. - Min Xu; Ming-Chih J. Kao; Juan Nunez-Iglesias; Joseph Nevins; Mike West; Xianghong Jasmine Zhou (BIOCOMP, 2007)

Gene Aging Nexus: a web database and data mining platform for microarray data on aging. - Fei Pan; Chi-Hsien Chiu; Sudip Pulapura; Michael R. Mehan; Juan Nunez-Iglesias; Kangyu Zhang; Kiran Kamath; Michael S. Waterman; Caleb E. Finch; Xianghong Jasmine Zhou (Nucleic Acids Res., 2007)

Usefulness and limitations of dK random graph models to predict interactions and functional homogeneity in biological networks under a pseudo-likelihood parameter estimation approach. - Wenhui Wang 003; Juan Nunez-Iglesias; Yihui Luan; Fengzhu Sun (BMC Bioinform., 2009)

An Integrative Network Approach to Map the Transcriptome to the Phenome. - Michael R. Mehan; Juan Nunez-Iglesias; Mrinal Kalakrishnan; Michael S. Waterman; Xianghong Jasmine Zhou (J. Comput. Biol., 2009)

An integrative modular approach to systematically predict gene-phenotype associations. - Michael R. Mehan; Juan Nunez-Iglesias; Chao Dai; Michael S. Waterman; Xianghong Jasmine Zhou (BMC Bioinform., 2010)

High Resolution Segmentation of Neuronal Tissues from Low Depth-Resolution EM Imagery. - Daniel Glasner; Tao Hu 005; Juan Nunez-Iglesias; Lou Scheffer; Shan Xu; Harald F. Hess; Richard Fetter; Dmitri B. Chklovskii; Ronen Basri (EMMCVPR, 2011)

Super-resolution using Sparse Representations over Learned Dictionaries: Reconstruction of Brain Structure using Electron Microscopy. - Tao Hu 005; Juan Nunez-Iglesias; Shiv Naga Prasad Vitaladevuni; Lou Scheffer; Shan Xu; Mehdi Bolorizadeh; Harald F. Hess; Richard Fetter; Dmitri B. Chklovskii (CoRR, 2012)

Betamax: Towards Optimal Sampling Strategies for High-Throughput Screens. - Dhruv Grover; Juan Nunez-Iglesias (J. Comput. Biol., 2012)

Machine learning of hierarchical clustering to segment n-dimensional images - Juan Nunez-Iglesias; Ryan Kennedy; Toufiq Parag; Jianbo Shi; Dmitri B. Chklovskii (CoRR, 2013)

Electron Microscopy Reconstruction of Brain Structure Using Sparse Representations Over Learned Dictionaries. - Tao Hu 005; Juan Nunez-Iglesias; Shiv Naga Prasad Vitaladevuni; Lou Scheffer; Shan Xu; Mehdi Bolorizadeh; Harald F. Hess; Richard Fetter; Dmitri B. Chklovskii (IEEE Trans. Medical Imaging, 2013)

scikit-image: Image processing in Python. - Stéfan van der Walt; Johannes L. Schönberger; Juan Nunez-Iglesias; François Boulogne; Joshua D. Warner; Neil Yager; Emmanuelle Gouillart; Tony Yu (CoRR, 2014)

Graph-based active learning of agglomeration (GALA): a Python library to segment 2D and 3D neuroimages. - Juan Nunez-Iglesias; Ryan Kennedy; Stephen M. Plaza; Anirban Chakraborty 001; William T. Katz (Frontiers Neuroinformatics, 2014)

Synaptic Cleft Segmentation in Non-isotropic Volume Electron Microscopy of the Complete Drosophila Brain. - Larissa Heinrich; Jan Funke; Constantin Pape; Juan Nunez-Iglesias; Stephan Saalfeld (MICCAI (2), 2018)

Needles in the Haystack-Rapid Error Detection for Cell Tracking Solutions. - Draga Doncila Pop; Pierre Le Bodic; Juan Nunez-Iglesias (ISBI, 2025)